ntLink: a toolkit for de novo genome assembly scaffolding and mapping using long reads

Autor: Coombe, Lauren, Warren, René L., Wong, Johnathan, Nikolic, Vladimir, Birol, Inanc

Publikováno v: Current Protocols, 3(4), e733 (2023)

With the increasing affordability and accessibility of genome sequencing data, de novo genome assembly is an important first step to a wide variety of downstream studies and analyses. Therefore, bioinformatics tools that enable the generation of high

Externí odkaz: http://arxiv.org/abs/2301.08785

Assembly and annotation of the black spruce genome provide insights on spruce phylogeny and evolution of stress response.

Autor: Lo, Theodora¹ (AUTHOR), Coombe, Lauren¹ (AUTHOR), Gagalova, Kristina K¹ (AUTHOR), Marr, Alex¹ (AUTHOR), Warren, René L¹ (AUTHOR), Kirk, Heather¹ (AUTHOR), Pandoh, Pawan¹ (AUTHOR), Zhao, Yongjun¹ (AUTHOR), Moore, Richard A¹ (AUTHOR), Mungall, Andrew J¹ (AUTHOR), Ritland, Carol^2,3 (AUTHOR), Pavy, Nathalie⁴ (AUTHOR), Jones, Steven J M¹ (AUTHOR), Bohlmann, Joerg^2,3,5 (AUTHOR), Bousquet, Jean⁴ (AUTHOR), Birol, Inanç¹ (AUTHOR) ibirol@bcgsc.ca, Thomson, Ashley⁶ (AUTHOR) ibirol@bcgsc.ca

Publikováno v: G3: Genes | Genomes | Genetics. Jan2024, Vol. 14 Issue 1, p1-16. 16p.

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LongStitch: high-quality genome assembly correction and scaffolding using long reads.

Autor: Coombe, Lauren¹ (AUTHOR) lcoombe@bcgsc.ca, Li, Janet X.¹ (AUTHOR), Lo, Theodora¹ (AUTHOR), Wong, Johnathan¹ (AUTHOR), Nikolic, Vladimir¹ (AUTHOR), Warren, René L.¹ (AUTHOR), Birol, Inanc¹ (AUTHOR)

Publikováno v: BMC Bioinformatics. 10/30/2021, Vol. 22 Issue 1, p1-13. 13p.