Zobrazeno 1 - 10
of 17
pro vyhledávání: '"Conrad Shyu"'
Autor:
Mariam Quiñones, David T. Liou, Conrad Shyu, Wongyu Kim, Ivan Vujkovic-Cvijin, Yasmine Belkaid, Darrell E. Hurt
Publikováno v:
BMC Bioinformatics, Vol 21, Iss 1, Pp 1-12 (2020)
Abstract Background The improvements in genomics methods coupled with readily accessible high-throughput sequencing have contributed to our understanding of microbial species, metagenomes, infectious diseases and more. To maximize the impact of these
Externí odkaz:
https://doaj.org/article/45dc95d6bdfd486d8eb4e06a9835bbf0
Publikováno v:
PLoS ONE, Vol 5, Iss 3, p e9392 (2010)
Molecular dynamics simulations were used to determine the binding affinities between the hormone 17-estradiol (E2) and different estrogen receptor (ER) isoforms in the rainbow trout, Oncorhynchus mykiss. Previous phylogenetic analysis indicates that
Externí odkaz:
https://doaj.org/article/e365189a6287413b84c0ee7dccaffa93
Autor:
Yasmine Belkaid, Conrad Shyu, Mariam Quinones, Ivan Vujkovic-Cvijin, David Liou, Wongyu Kim, Darrell E. Hurt
Publikováno v:
BMC Bioinformatics
BMC Bioinformatics, Vol 21, Iss 1, Pp 1-12 (2020)
BMC Bioinformatics, Vol 21, Iss 1, Pp 1-12 (2020)
Background The improvements in genomics methods coupled with readily accessible high-throughput sequencing have contributed to our understanding of microbial species, metagenomes, infectious diseases and more. To maximize the impact of these genomics
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::90c684d4e9db63f0a939c4753b3d7a07
http://europepmc.org/articles/PMC7471527
http://europepmc.org/articles/PMC7471527
Autor:
F. Marty Ytreberg, Conrad Shyu
Publikováno v:
Journal of Computational Chemistry. 32:134-141
This report details an approach to improve the accuracy of free energy difference estimates using thermodynamic integration data (slope of the free energy with respect to the switching variable λ) and its application to calculating solvation free en
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3182447f008c6ada274f381969f883b4
https://doi.org/10.1002/jcc.21609
https://doi.org/10.1002/jcc.21609
Publikováno v:
Microbial Ecology. 53:562-570
A web-based resource, Microbial Community Analysis (MiCA), has been developed to facilitate studies on microbial community ecology that use analyses of terminal-restriction fragment length polymorphisms (T-RFLP) of 16S and 18S rRNA genes. MiCA provid
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::36f24d0f7cb6dcd1a0c8fa0a1c5609ad
https://doi.org/10.1007/s00248-006-9106-0
https://doi.org/10.1007/s00248-006-9106-0
Publikováno v:
Genetic Programming and Evolvable Machines. 5:121-144
In this paper we provide a brief review of current work in the area of multiple sequence alignment (MSA) for DNA and protein sequences using evolutionary computation (EC). We detail the strengths and weaknesses of EC techniques for MSA. In addition,
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::0a7218eb641bd45540d258be8ce96b25
https://doi.org/10.1023/b:genp.0000023684.05565.78
https://doi.org/10.1023/b:genp.0000023684.05565.78
Autor:
F. Marty Ytreberg, Conrad Shyu
Publikováno v:
Journal of computational chemistry. 30(14)
This report presents the application of polynomial regression for estimating free energy differences using thermodynamic integration data, i.e., slope of free energy with respect to the switching variable lambda. We employ linear regression to constr
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::16c3483148557175e62ac14cb493eae2
https://pubmed.ncbi.nlm.nih.gov/19266482
https://pubmed.ncbi.nlm.nih.gov/19266482
Autor:
Larry J. Forney, Conrad Shyu, Christopher J. Williams, Ursel M. E. Schütte, Zaid Abdo, Jacob D. Pierson, Stephen J. Bent
Publikováno v:
Applied microbiology and biotechnology. 80(3)
Terminal restriction fragment length polymorphism (T-RFLP) analysis is a popular high-throughput fingerprinting technique used to monitor changes in the structure and composition of microbial communities. This approach is widely used because it offer
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::934d24884caa447c78003e98ceef09ec
https://pubmed.ncbi.nlm.nih.gov/18648804
https://pubmed.ncbi.nlm.nih.gov/18648804
Autor:
James A. Foster, Terence Soule, Stephen J. Bent, Larry J. Forney, Conrad Shyu, K.X. Liao, K. Sale
Publikováno v:
CSB
Analyses of microbial community structure based on terminal restriction fragment length polymorphisms (T-RFLP) of 16S rRNA genes are hindered by the lack of computational tools needed to aid experimental design, and to archive and analyze large data
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::22a0cea11594db3efc7866ca94baad83
https://doi.org/10.1109/csb.2002.1039364
https://doi.org/10.1109/csb.2002.1039364
Publikováno v:
CSB
We developed an integer-encoding scheme and a search algorithm for in silico PCR (polymerase chain reaction) amplification that identifies sequence homology with the specified primers and enzymes. Unlike the traditional character-based approach, the
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::1f6b8100490dbd0fb03cdde1240bd854
https://doi.org/10.1109/csb.2002.1039361
https://doi.org/10.1109/csb.2002.1039361