Zobrazeno 1 - 9
of 9
pro vyhledávání: '"Connor Chato"'
Publikováno v:
PLoS Computational Biology, Vol 18, Iss 11, p e1010745 (2022)
Clusters of genetically similar infections suggest rapid transmission and may indicate priorities for public health action or reveal underlying epidemiological processes. However, clusters often require user-defined thresholds and are sensitive to no
Externí odkaz:
https://doaj.org/article/67112e635a2a48d4927fd8683a38d966
Publikováno v:
PLoS Computational Biology, Vol 18, Iss 11, p e1010649 (2022)
Externí odkaz:
https://doaj.org/article/52b815c5ad26441aa90adf6a7bbbb0d1
Publikováno v:
NAR Genomics and Bioinformatics. 5
Genetic sequencing is subject to many different types of errors, but most analyses treat the resultant sequences as if they are known without error. Next generation sequencing methods rely on significantly larger numbers of reads than previous sequen
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::ded283ddbd5eeed7c750b62c38d79744
https://doi.org/10.1093/nargab/lqad038
https://doi.org/10.1093/nargab/lqad038
Publikováno v:
Virus Evolution. 9
Defining clusters of epidemiologically related infections is a common problem in the surveillance of infectious disease. A popular method for generating clusters is pairwise distance clustering, which assigns pairs of sequences to the same cluster if
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::b95284294c520ff64f236e8b2f4c8e31
https://doi.org/10.1093/ve/vead026
https://doi.org/10.1093/ve/vead026
Defining clusters of epidemiologically-related infections is a common problem in the surveillance of infectious disease. A popular method for generating clusters is pairwise distance clustering, which assigns pairs of sequences to the same cluster if
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::85be10fb8dbeba3cd22b438b7ca294d4
https://doi.org/10.1101/2022.08.22.504699
https://doi.org/10.1101/2022.08.22.504699
Genetic sequencing is subject to many different types of errors, but most analyses treat the resultant sequences as if they are known without error. Next generation sequencing methods rely on significantly larger numbers of reads than previous sequen
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::ca78116b8cccda06a5b2204bb7ba7f27
https://doi.org/10.1101/2021.11.30.470642
https://doi.org/10.1101/2021.11.30.470642
Autor:
Art F. Y. Poon, Connor Chato, Gopi Gugan, Bonnie Lu, Kaitlyn Wade, Molly Liu, Roux-Cil Ferreira, Abayomi S Olabode, Laura Munoz Baena, Emmanuel Wong
Phylogenetics has played a pivotal role in the genomic epidemiology of SARS-CoV-2, such as tracking the emergence and global spread of variants, and scientific communication. However, the rapid accumulation of genomic data from around the world — w
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f9a8893940c1aa5b2b934e0409c604df
https://doi.org/10.1101/2021.07.20.453079
https://doi.org/10.1101/2021.07.20.453079
Publikováno v:
Virus Evolution
In infectious disease epidemiology, clustering cases of infection in space and time is a standard method to identify and characterize outbreaks. Clustering cases by genetic similarity is analogous to spatial clustering, and may be more effective for
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2499f243484850fc7cd281462ff5b939
https://pubmed.ncbi.nlm.nih.gov/32190349
https://pubmed.ncbi.nlm.nih.gov/32190349
Publikováno v:
Current opinion in HIV and AIDS. 14(3)
PURPOSE OF REVIEW The purpose of this study is to summarize recent advances in public health applications of comparative methods for HIV-1 sequence analysis in real time, including genetic clustering methods. RECENT FINDINGS Over the past 2 years, se
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::24987207293daccae6a26d657c7e6fdf
https://pubmed.ncbi.nlm.nih.gov/30882486
https://pubmed.ncbi.nlm.nih.gov/30882486