Long noncoding RNA study: Genome-wide approaches

Autor: Shuang Tao, Yarui Hou, Liting Diao, Yanxia Hu, Wanyi Xu, Shujuan Xie, Zhendong Xiao

Publikováno v: Genes and Diseases, Vol 10, Iss 6, Pp 2491-2510 (2023)

Long noncoding RNAs (lncRNAs) have been confirmed to play a crucial role in various biological processes across several species. Though many efforts have been devoted to the expansion of the lncRNAs landscape, much about lncRNAs is still unknown due

Externí odkaz: https://doaj.org/article/9e1513df0708452ca2ad55c72459f6e9

Compi: a framework for portable and reproducible pipelines

Autor: Hugo López-Fernández, Osvaldo Graña-Castro, Alba Nogueira-Rodríguez, Miguel Reboiro-Jato, Daniel Glez-Peña

Publikováno v: PeerJ Computer Science, Vol 7, p e593 (2021)

Compi is an application framework to develop end-user, pipeline-based applications with a primary emphasis on: (i) user interface generation, by automatically generating a command-line interface based on the pipeline specific parameter definitions; (

Externí odkaz: https://doaj.org/article/faeccdfd60c9443e876aa18359bdc2ea

Perspectives on automated composition of workflows in the life sciences

Autor: Robin A. Richardson, Timothy J. Griffin, Hailiang Mei, Jon Ison, Pratik D. Jagtap, A. Amor, Ilkay Altintas, Christopher J. O. Baker, Magnus Palmblad, Szoke Szaniszlo, Tobias Kuhn, Carole Goble, Suzan Verberne, Anna-Lena Lamprecht, Paulos Charonyktakis, Hans Ienasescu, Salvador Capella-Gutierrez, Matúš Kalaš, Michael R. Crusoe, Aswin Verhoeven, Steffen Möller, Katherine Wolstencroft, Yolanda Gil, Vedran Kasalica, Hervé Ménager, Vincent Robert, Stian Soiland-Reyes, Alireza Khanteymoori, Paul Groth, Robert Stevens, Mohammad Sadnan Al Manir, Veit Schwämmle

Publikováno v: F1000Research, 10:897. F1000 Research Ltd.
F1000Research, 10, 1. F1000 Research Ltd.
F1000Research
F1000Research, 2021, 10, pp.897. ⟨10.12688/f1000research.54159.1⟩
Lamprecht, A-L, Palmblad, M, Ison, J, Schwämmle, V S, Sadnan Al Manir, M, Altintas, I, Baker, C J O, Amor, A B H, Capella-Gutierrez, S, Charonyktakis, P, Crusoe, M R, Gil, Y, Goble, C, Griffin, T J, Groth, P, Ienasescu, H, Jagtap, P, Kalaš, M, Kasalica, V, Khanteymoori, A, Kuhn, T, Mei, H, Ménager, H, Möller, S, Richardson, R A, Robert, V, Soiland-Reyes, S, Stevens, R K, Szaniszlo, S, Verberne, S & Verhoeven, A 2021, ' Perspectives on automated composition of workflows in the life sciences ', F1000Research, vol. 10, 897 . https://doi.org/10.12688/f1000research.54159.1
F1000Research, 10
Lamprecht, A L, Palmblad, M, Ison, J, Schwämmle, V, Al Manir, M S, Altintas, I, Baker, C J O, Ben Hadj Amor, A, Capella-Gutierrez, S, Charonyktakis, P, Crusoe, M R, Gil, Y, Goble, C, Griffin, T J, Groth, P, Ienasescu, H, Jagtap, P, Kalaš, M, Kasalica, V, Khanteymoori, A, Kuhn, T, Mei, H, Ménager, H, Möller, S, Richardson, R A, Robert, V, Soiland-Reyes, S, Stevens, R, Szaniszlo, S, Verberne, S, Verhoeven, A & Wolstencroft, K 2021, ' Perspectives on automated composition of workflows in the life sciences ', F1000Research, vol. 10, 897, pp. 1-28 . https://doi.org/10.12688/f1000research.54159.1
F1000Research, 10:897, 1-28. F1000 Research Ltd.
F1000Research, 10. F1000 Research Ltd.
Lamprecht, A-L, Palmblad, M, Ison, J, Schwämmle, V, Al Manir, M S, Altintas, I, Baker, C J O, Ben Hadj Amor, A, Capella-Gutierrez, S, Charonyktakis, P, Crusoe, M R, Gil, Y, Goble, C, Griffin, T J, Groth, P, Ienasescu, H, Jagtap, P, Kalaš, M, Kasalica, V, Khanteymoori, A, Kuhn, T, Mei, H, Ménager, H, Möller, S, Richardson, R A, Robert, V, Soiland-Reyes, S, Stevens, R, Szaniszlo, S, Verberne, S, Verhoeven, A & Wolstencroft, K 2021, ' Perspectives on automated composition of workflows in the life sciences ', F1000Research, vol. 10, 897 . https://doi.org/10.12688/f1000research.54159.1

Scientific data analyses often combine several computational tools in automated pipelines, or workflows. Thousands of such workflows have been used in the life sciences, though their composition has remained a cumbersome manual process due to a lack

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::17f6f7b52a69eeff5cdcf069034bb015
https://doi.org/10.12688/f1000research.54159.1

TeachOpenCADD 2022: open source and FAIR Python pipelines to assist in structural bioinformatics and cheminformatics research

Autor: Dominique, Sydow, Jaime, Rodríguez-Guerra, Talia B, Kimber, David, Schaller, Corey J, Taylor, Yonghui, Chen, Mareike, Leja, Sakshi, Misra, Michele, Wichmann, Armin, Ariamajd, Andrea, Volkamer

Computational pipelines have become a crucial part of modern drug discovery campaigns. Setting up and maintaining such pipelines, however, can be challenging and time-consuming-especially for novice scientists in this domain. TeachOpenCADD is a platf

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::bdb64c78a979acf7582eba32eeff5812

Riemannian classification of single-trial surface EEG and sources during checkerboard and navigational images in humans

Autor: Cédric Simar, Robin Petit, Nichita Bozga, Axelle Leroy, Ana-Maria Cebolla, Mathieu Petieau, Gianluca Bontempi, Guy Cheron

Publikováno v: PLoS ONE
PLoS ONE, Vol 17, Iss 1, p e0262417 (2022)

Objective Different visual stimuli are classically used for triggering visual evoked potentials comprising well-defined components linked to the content of the displayed image. These evoked components result from the average of ongoing EEG signals in

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9ffb6f3151bf1694f3c0e4211744955a
http://europepmc.org/articles/PMC8759639