Canada's provincial COVID-19 pandemic modelling efforts: A review of mathematical models and their impacts on the responses.

Autor: Xia Y; Department of Epidemiology and Biostatistics, School of Population and Global Health, McGill University, Montréal, QC, Canada., Flores Anato JL; Department of Epidemiology and Biostatistics, School of Population and Global Health, McGill University, Montréal, QC, Canada., Colijn C; Department of Mathematics, Faculty of Science, Simon Fraser University, Burnaby, BC, Canada., Janjua N; School of Population and Public Health, University of British Columbia, Vancouver, BC, Canada.; British Columbia Centre for Disease Control (BCCDC), Vancouver, BC, Canada., Irvine M; British Columbia Centre for Disease Control (BCCDC), Vancouver, BC, Canada., Williamson T; Department of Community Health Sciences, University of Calgary, Calgary, AB, Canada.; Centre for Health Informatics, University of Calgary, Calgary, AB, Canada., Varughese MB; Analytics and Performance Reporting Branch, Alberta Health, Edmonton, AB, Canada.; Department of Mathematical and Statistical Sciences, University of Alberta, Edmonton, AB, Canada., Li M; Department of Mathematical and Statistical Sciences, University of Alberta, Edmonton, AB, Canada., Osgood N; Department of Computer Science, University of Saskatchewan, Saskatoon, SK, Canada., Earn DJD; Department of Mathematics & Statistics, McMaster University, Hamilton, ON, Canada.; M. G. DeGroote Institute for Infectious Disease Research, McMaster University, Hamilton, ON, Canada., Sander B; Institute of Health Policy, Management and Evaluation (IHPME), Dalla Lana School of Public Health, University of Toronto, Toronto, ON, Canada.; Toronto General Hospital Research Institute, University Health Network, Toronto, ON, Canada.; Public Health Ontario, Toronto, ON, Canada.; ICES, Toronto, ON, Canada., Cipriano LE; Ivey Business School, University of Western Ontario, London, ON, Canada.; Departments of Epidemiology & Biostatistics and Medicine, Schulich School of Medicine & Dentistry, University of Western Ontario, London, ON, Canada., Murty K; Department of Mathematics, University of Toronto, Toronto, ON, Canada., Xiu F; Department of Epidemiology and Biostatistics, School of Population and Global Health, McGill University, Montréal, QC, Canada., Godin A; Department of Medicine, Faculty of Medicine and Health Science, McGill University, Montréal, QC, Canada., Buckeridge D; Department of Epidemiology and Biostatistics, School of Population and Global Health, McGill University, Montréal, QC, Canada., Hurford A; Department of Biology and Department of Mathematics and Statistics, Faculty of Science, Memorial University of Newfoundland and Labrador, St. John's, NL, Canada., Mishra S; Institute of Health Policy, Management and Evaluation (IHPME), Dalla Lana School of Public Health, University of Toronto, Toronto, ON, Canada.; Division of Infectious Diseases, Department of Medicine, University of Toronto, Toronto, ON, Canada.; MAP Centre for Urban Health Solutions, St. Michael's Hospital, Unity Health Toronto, Toronto, ON, Canada.; Institute of Medical Sciences, University of Toronto, Toronto, ON, Canada., Maheu-Giroux M; Department of Epidemiology and Biostatistics, School of Population and Global Health, McGill University, Montréal, QC, Canada. mathieu.maheu-giroux@mcgill.ca.

Publikováno v: Canadian journal of public health = Revue canadienne de sante publique [Can J Public Health] 2024 Aug; Vol. 115 (4), pp. 541-557. Date of Electronic Publication: 2024 Jul 25.

Author Correction: The recent rapid expansion of multidrug resistant Ural lineage Mycobacterium tuberculosis in Moldova.

Autor: Chitwood MH; Department of Epidemiology of Microbial Disease, Yale School of Public Health, New Haven, CT, USA. melanie.chitwood@yale.edu., Colijn C; Department of Mathematics, Simon Fraser University, Burnaby, BC, Canada., Yang C; School of Public Health (Shenzhen), Shenzhen Campus of Sun Yat-sen University, Guangzhou University Town Guangdong, Guangdong, PR China., Crudu V; Phthisiopneumology Institute, Strada Constantin Vârnav 13, Chisinau, Republic of Moldova., Ciobanu N; Phthisiopneumology Institute, Strada Constantin Vârnav 13, Chisinau, Republic of Moldova., Codreanu A; Phthisiopneumology Institute, Strada Constantin Vârnav 13, Chisinau, Republic of Moldova., Kim J; Department of Computational Biology, Cornell University, Ithaca, NY, USA., Rancu I; Department of Epidemiology of Microbial Disease, Yale School of Public Health, New Haven, CT, USA., Rhee K; Department of Medicine, Weill Cornell Medicine, New York, NY, USA., Cohen T; Department of Epidemiology of Microbial Disease, Yale School of Public Health, New Haven, CT, USA. theodore.cohen@yale.edu., Sobkowiak B; Department of Epidemiology of Microbial Disease, Yale School of Public Health, New Haven, CT, USA.

Publikováno v: Nature communications [Nat Commun] 2024 Oct 29; Vol. 15 (1), pp. 9332. Date of Electronic Publication: 2024 Oct 29.

The Canadian VirusSeq Data Portal and Duotang: open resources for SARS-CoV-2 viral sequences and genomic epidemiology.

Autor: Gill EE; Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC, Canada., Jia B; Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC, Canada., Murall CL; Department of Microbiology and Immunology, McGill University, Montreal, QC, Canada.; National Microbiology Laboratory, Public Health Agency of Canada, Winnipeg, MB, Canada., Poujol R; Research Centre, Montréal Heart Institute, Montréal, QC, Canada., Anwar MZ; Centre for Infectious Disease Genomics and One Health, Faculty of Health Sciences, Simon Fraser University, Burnaby, BC, Canada., John NS; Centre for Infectious Disease Genomics and One Health, Faculty of Health Sciences, Simon Fraser University, Burnaby, BC, Canada., Richardsson J; Ontario Institute for Cancer Research, Toronto, ON, Canada., Hobb A; DNAstack, Toronto, ON, Canada., Olabode AS; Department of Pathology and Laboratory Medicine, Western University, London, ON, Canada., Lepsa A; Ontario Institute for Cancer Research, Toronto, ON, Canada., Duggan AT; National Microbiology Laboratory, Public Health Agency of Canada, Winnipeg, MB, Canada., Tyler AD; National Microbiology Laboratory, Public Health Agency of Canada, Winnipeg, MB, Canada., N'Guessan A; McGill Genome Centre, McGill University, Montréal, QC, Canada.; Département de Biochimie et Médecine Moléculaire, Université de Montréal, Montreal, QC, Canada., Kachru A; Ontario Institute for Cancer Research, Toronto, ON, Canada., Chan B; Ontario Institute for Cancer Research, Toronto, ON, Canada., Yoshida C; National Microbiology Laboratory, Public Health Agency of Canada, Winnipeg, MB, Canada., Yung CK; Indoc Systems, Toronto, ON, Canada.; Ontario Institute for Cancer Research, Toronto, ON, Canada., Bujold D; Department of Human Genetics, McGill University, Montréal, QC, Canada.; Canadian Centre for Computational Genomics, Montréal, QC, Canada., Andric D; Ontario Institute for Cancer Research, Toronto, ON, Canada., Su E; Ontario Institute for Cancer Research, Toronto, ON, Canada., Griffiths EJ; Centre for Infectious Disease Genomics and One Health, Faculty of Health Sciences, Simon Fraser University, Burnaby, BC, Canada., Van Domselaar G; National Microbiology Laboratory, Public Health Agency of Canada, Winnipeg, MB, Canada., Jolly GW; National Microbiology Laboratory, Public Health Agency of Canada, Winnipeg, MB, Canada., Ward HKE; DNAstack, Toronto, ON, Canada., Feher H; Ontario Institute for Cancer Research, Toronto, ON, Canada., Baker J; Ontario Institute for Cancer Research, Toronto, ON, Canada., Simpson JT; Ontario Institute for Cancer Research, Toronto, ON, Canada., Uddin J; Ontario Institute for Cancer Research, Toronto, ON, Canada., Ragoussis J; McGill Genome Centre, McGill University, Montréal, QC, Canada., Eubank J; Ontario Institute for Cancer Research, Toronto, ON, Canada., Fritz JH; Department of Microbiology and Immunology, McGill Research Center on Complex Traits (MRCCT), Dahdaleh Institute of Genomic Medicine (DIGM), McGill University, Montréal, QC, Canada., Gálvez JH; Ontario Institute for Cancer Research, Toronto, ON, Canada., Fang K; DNAstack, Toronto, ON, Canada., Cullion K; Ontario Institute for Cancer Research, Toronto, ON, Canada., Rivera L; Ontario Institute for Cancer Research, Toronto, ON, Canada., Xiang L; Ontario Institute for Cancer Research, Toronto, ON, Canada., Croxen MA; Alberta Precision Laboratories, Public Health Laboratory, Edmonton, AB, Canada.; Department of Laboratory Medicine and Pathology, University of Alberta, Edmonton, AB, Canada.; Li Ka Shing Institute of Virology, University of Alberta, Edmonton, AB, Canada.; Women and Children's Health Research Institute, University of Alberta, Edmonton, AB, Canada., Shiell M; Ontario Institute for Cancer Research, Toronto, ON, Canada., Prystajecky N; British Columbia Centre for Disease Control Public Health Laboratory, Vancouver, BC, Canada.; Department of Pathology and Laboratory Medicine, Faculty of Medicine, University of British Columbia, Vancouver, BC, Canada., Quirion PO; Canadian Centre for Computational Genomics, Montréal, QC, Canada., Bajari R; Ontario Institute for Cancer Research, Toronto, ON, Canada., Rich S; Ontario Institute for Cancer Research, Toronto, ON, Canada., Mubareka S; Sunnybrook Research Institute, Department of Laboratory Medicine and Pathobiology, University of Toronto, Toronto, ON, Canada., Moreira S; Université de Montréal, Montréal, QC, Canada., Cain S; Ontario Institute for Cancer Research, Toronto, ON, Canada., Sutcliffe SG; Department of Microbiology and Immunology, McGill University, Montréal, QC, Canada., Kraemer SA; McGill Genome Centre, McGill University, Montréal, QC, Canada.; Aquatic Contaminants Research Division, ECCC, Montréal, QC, Canada., Alturmessov Y; Ontario Institute for Cancer Research, Toronto, ON, Canada., Joly Y; Centre of Genomics and Policy, McGill University, Montréal, QC, Canada., Cphln Consortium, CanCOGeN Consortium, VirusSeq Data Portal Academic And Health Network, Fiume M; DNAstack, Toronto, ON, Canada., Snutch TP; Michael Smith Laboratories and Djavad Mowafaghian Centre for Brain Health, University of British Columbia, Vancouver, BC, Canada., Bell C; Genome Canada, 150 Metcalfe Street, Suite 2100, Ottawa, ON, Canada., Lopez-Correa C; Genome Canada, 150 Metcalfe Street, Suite 2100, Ottawa, ON, Canada., Hussin JG; Research Centre, Montréal Heart Institute, Montréal, QC, Canada.; Mila-Québec AI institute, Montréal, QC, Canada.; Département de Biochimie et Médecine Moléculaire, Université de Montréal, Montreal, QC, Canada., Joy JB; Molecular Epidemiology and Evolutionary Genetics, BC Centre for Excellence in HIV/AIDS, Vancouver, BC, Canada.; Infectious Diseases, Department of Medicine, University of British Columbia, Vancouver, BC, Canada.; Bioinformatics Programme, University of British Columbia, Vancouver, BC, Canada., Colijn C; Department of Mathematics, Simon Fraser University, Burnaby, BC, Canada., Gordon PMK; Centre for Health Genomics and Informatics, University of Calgary, Calgary, AB, Canada., Hsiao WWL; Centre for Infectious Disease Genomics and One Health, Faculty of Health Sciences, Simon Fraser University, Burnaby, BC, Canada., Poon AFY; Department of Pathology and Laboratory Medicine, Western University, London, ON, Canada., Knox NC; National Microbiology Laboratory, Public Health Agency of Canada, Winnipeg, MB, Canada., Courtot M; Department of Medical BioPhysics, University of Toronto, ON, Canada.; Ontario Institute for Cancer Research, Toronto, ON, Canada., Stein L; Ontario Institute for Cancer Research, Toronto, ON, Canada., Otto SP; Department of Zoology and Biodiversity Research Centre, University of British Columbia, Vancouver, BC, Canada., Bourque G; Department of Human Genetics, McGill University, Montréal, QC, Canada.; Canadian Centre for Computational Genomics, Montréal, QC, Canada., Shapiro BJ; Department of Microbiology and Immunology, McGill University, Montréal, QC, Canada., Brinkman FSL; Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC, Canada.

Publikováno v: Microbial genomics [Microb Genom] 2024 Oct; Vol. 10 (10).

e3SIM: epidemiological-ecological-evolutionary simulation framework for genomic epidemiology.

Autor: Xu P; Department of Molecular Biology & Genetics, Cornell University, Ithaca, NY, USA., Liang S; Department of Computational Science, Cornell University, Ithaca, NY, USA., Hahn A; Department of Computational Science, Cornell University, Ithaca, NY, USA., Zhao V; Department of Computational Science, Cornell University, Ithaca, NY, USA., Lo WT'; Department of Computational Biology, Cornell University, Ithaca, NY, USA., Haller BC; Department of Computational Biology, Cornell University, Ithaca, NY, USA., Sobkowiak B; Department of Epidemiology of Microbial Disease, Yale School of Public Health, New Haven, CT, USA., Chitwood MH; Department of Epidemiology of Microbial Disease, Yale School of Public Health, New Haven, CT, USA., Colijn C; Department of Mathematics, Simon Fraser University, Burnaby, BC, Canada., Cohen T; Department of Epidemiology of Microbial Disease, Yale School of Public Health, New Haven, CT, USA., Rhee KY; Department of Medicine, Weill Cornell Medicine, New York, NY, USA., Messer PW; Department of Computational Biology, Cornell University, Ithaca, NY, USA., Wells MT; Department of Statistics and Data Science, Cornell University, Ithaca, NY, USA., Clark AG; Department of Molecular Biology & Genetics, Cornell University, Ithaca, NY, USA.; Department of Computational Biology, Cornell University, Ithaca, NY, USA., Kim J; Department of Computational Biology, Cornell University, Ithaca, NY, USA.

Publikováno v: BioRxiv : the preprint server for biology [bioRxiv] 2024 Jul 02. Date of Electronic Publication: 2024 Jul 02.

Spin-dependent Bohm trajectories for hydrogen eigenstates

Autor: Colijn, C., Vrscay, E. R.

Publikováno v: Phys. Lett. A 300 (2002) 334-340

The Bohm trajectories for several hydrogen atom eigenstates are determined, taking into account the additional momentum term that arises from the Pauli current. Unlike the original Bohmian result, the spin-dependent term yields nonstationary trajecto

Externí odkaz: http://arxiv.org/abs/quant-ph/0308105