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ORTHOSKIM: In silico sequence capture from genomic and transcriptomic libraries for phylogenomic and barcoding applications

Autor: Pouchon, Charles, Boyer, Frédéric, Roquet, Cristina, Denoeud, France, Chave, Jérome, Coissac, Eric, Alsos, Inger Greve, Lavergne, Sébastien, Smyčka, J, Boleda, M, Thuiller, W, Gielly, L, Taberlet, P, Rioux, D, Hombiat, A, Bzeznick, B, Alberti, A, Wincker, P, Orvain, C, Perrier, C, Douzet, R, Rome, M, Valay, Jg, Aubert, S, Zimmermann, N, Wüest, Ro, Latzin, S, Wipf, S, van Es, J, Garraud, L, Villaret, Jc, Abdulhak, S, Bonnet, V, Huc, S, Fort, N, Legland, T, Sanz, T, Pache, G, Mikolajczak, A, Noble, V, Michaud, H, Offerhaus, B, Pires, M, Morvant, Y, Dentant, C, Salomez, P, Bonet, R, Delahaye, T, Leccia, Mf, Perfus, M, Eggenberg, S, Möhl, A, Hurdu, B, Pușcaș, M, Slovák, M, Alsos, Ig, Merkel, F, Lammers, Y, Coissac, E, Pouchon, C, Denoeud, F

Publikováno v: Molecular Ecology Resources
Molecular Ecology Resources, 2022, 22 (5), pp.2018-2037. ⟨10.1111/1755-0998.13584⟩

Low-coverage whole genome shotgun sequencing (or genome skimming) has emerged as a cost-effective method for acquiring genomic data in nonmodel organisms. This method provides sequence information on chloroplast genome (cpDNA), mitochondrial genome (

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::78f9e2b254cd1e95d3a4c771fa1aedd3
https://hal.science/hal-03839343

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The evolutionary fate of the chloroplast and nuclear rps16 genes as revealed through the sequencing and comparative analyses of four novel legume chloroplast genomes from Lupinus

Autor: Keller, Jean, Rousseau-Gueutin, Mathieu, Martin, Guillaume E., Morice, Jérôme, Boutte, Julien, Coissac, E., Ourari, Malika, Ainouche, Malika L., Salmon, Armel, Cabello-Hurtado, Francisco, Aïnouche, Abdelkader

Publikováno v: DNA Research: An International Journal for Rapid Publication of Reports on Genes and Genomes
DNA Research
DNA Research, Oxford University Press (OUP), 2017, 24 (4), pp.343-358. ⟨10.1093/dnares/dsx006⟩
DNA Research, 2017, 24 (4), pp.343-358. ⟨10.1093/dnares/dsx006⟩
DNA Research 4 (24), 343-358. (2017)

International audience; The Fabaceae family is considered as a model system for understanding chloroplast genome evolution due to the presence of extensive structural rearrangements, gene losses and localized hypermutable regions. Here, we provide se

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid_dedup__::bc410676eff61cf8c84244187ef42cd5
http://europepmc.org/articles/PMC5737547