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Data-driven nucleus subclassification on colon hematoxylin and eosin using style-transferred digital pathology.

Autor: Remedios LW; Vanderbilt University, Department of Computer Science, Nashville, Tennessee, United States., Bao S; Vanderbilt University, Department of Electrical and Computer Engineering, Nashville, Tennessee, United States., Remedios SW; Johns Hopkins University, Department of Computer Science, Baltimore, Maryland, United States.; National Institutes of Health, Department of Radiology and Imaging Sciences, Bethesda, Maryland, United States., Lee HH; Vanderbilt University, Department of Computer Science, Nashville, Tennessee, United States., Cai LY; Vanderbilt University, Department of Biomedical Engineering, Nashville, Tennessee, United States., Li T; Vanderbilt University, Department of Biomedical Engineering, Nashville, Tennessee, United States., Deng R; Vanderbilt University, Department of Computer Science, Nashville, Tennessee, United States., Newlin NR; Vanderbilt University, Department of Computer Science, Nashville, Tennessee, United States., Saunders AM; Vanderbilt University, Department of Electrical and Computer Engineering, Nashville, Tennessee, United States., Cui C; Vanderbilt University, Department of Computer Science, Nashville, Tennessee, United States., Li J; Vanderbilt University Medical Center, Department of Biostatistics, Nashville, Tennessee, United States., Liu Q; Vanderbilt University Medical Center, Department of Biostatistics, Nashville, Tennessee, United States.; Vanderbilt University Medical Center, Center for Quantitative Sciences, Nashville, Tennessee, United States., Lau KS; Vanderbilt University Medical Center, Center for Quantitative Sciences, Nashville, Tennessee, United States.; Vanderbilt University Medical Center, Epithelial Biology Center, Nashville, Tennessee, United States.; Vanderbilt University School of Medicine, Department of Cell and Developmental Biology, Nashville, Tennessee, United States., Roland JT; Vanderbilt University Medical Center, Epithelial Biology Center, Nashville, Tennessee, United States., Washington MK; Vanderbilt University Medical Center, Department of Pathology, Microbiology, and Immunology, Nashville, Tennessee, United States., Coburn LA; Vanderbilt University Medical Center, Division of Gastroenterology, Hepatology, and Nutrition, Department of Medicine, Nashville, Tennessee, United States.; Vanderbilt University Medical Center, Vanderbilt Center for Mucosal Inflammation and Cancer, Nashville, Tennessee, United States.; Vanderbilt University School of Medicine, Program in Cancer Biology, Nashville, Tennessee, United States.; Veterans Affairs Tennessee Valley Healthcare System, Nashville, Tennessee, United States., Wilson KT; Vanderbilt University Medical Center, Department of Pathology, Microbiology, and Immunology, Nashville, Tennessee, United States.; Vanderbilt University Medical Center, Division of Gastroenterology, Hepatology, and Nutrition, Department of Medicine, Nashville, Tennessee, United States.; Vanderbilt University Medical Center, Vanderbilt Center for Mucosal Inflammation and Cancer, Nashville, Tennessee, United States.; Vanderbilt University School of Medicine, Program in Cancer Biology, Nashville, Tennessee, United States.; Veterans Affairs Tennessee Valley Healthcare System, Nashville, Tennessee, United States., Huo Y; Vanderbilt University, Department of Computer Science, Nashville, Tennessee, United States.; Vanderbilt University, Department of Electrical and Computer Engineering, Nashville, Tennessee, United States., Landman BA; Vanderbilt University, Department of Computer Science, Nashville, Tennessee, United States.; Vanderbilt University, Department of Electrical and Computer Engineering, Nashville, Tennessee, United States.; Vanderbilt University, Department of Biomedical Engineering, Nashville, Tennessee, United States.

Publikováno v: Journal of medical imaging (Bellingham, Wash.) [J Med Imaging (Bellingham)] 2024 Nov; Vol. 11 (6), pp. 067501. Date of Electronic Publication: 2024 Nov 05.

Identification and multimodal characterization of a specialized epithelial cell type associated with Crohn's disease.

Autor: Li J; Center for Quantitative Sciences, Vanderbilt University Medical Center, Nashville, TN, USA.; Department of Biostatistics, Vanderbilt University Medical Center, Nashville, TN, USA., Simmons AJ; Epithelial Biology Center, Vanderbilt University Medical Center, Nashville, TN, USA.; Department of Cell and Developmental Biology, Vanderbilt University School of Medicine, Nashville, TN, USA., Hawkins CV; Division of Gastroenterology, Hepatology, and Nutrition, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA., Chiron S; Division of Gastroenterology, Hepatology, and Nutrition, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA., Ramirez-Solano MA; Center for Quantitative Sciences, Vanderbilt University Medical Center, Nashville, TN, USA.; Department of Biostatistics, Vanderbilt University Medical Center, Nashville, TN, USA., Tasneem N; Epithelial Biology Center, Vanderbilt University Medical Center, Nashville, TN, USA.; Department of Cell and Developmental Biology, Vanderbilt University School of Medicine, Nashville, TN, USA., Kaur H; Epithelial Biology Center, Vanderbilt University Medical Center, Nashville, TN, USA.; Program in Chemical and Physical Biology, Vanderbilt University School of Medicine, Nashville, TN, USA., Xu Y; Epithelial Biology Center, Vanderbilt University Medical Center, Nashville, TN, USA.; Department of Cell and Developmental Biology, Vanderbilt University School of Medicine, Nashville, TN, USA., Revetta F; Department of Pathology, Microbiology, and Immunology, Vanderbilt University Medical Center, Nashville, TN, USA., Vega PN; Epithelial Biology Center, Vanderbilt University Medical Center, Nashville, TN, USA.; Department of Cell and Developmental Biology, Vanderbilt University School of Medicine, Nashville, TN, USA., Bao S; Department of Electrical and Computer Engineering, Vanderbilt University, Nashville, TN, USA., Cui C; Department of Computer Science, Vanderbilt University, Nashville, TN, USA., Tyree RN; Division of Gastroenterology, Hepatology, and Nutrition, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA., Raber LW; Division of Gastroenterology, Hepatology, and Nutrition, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA., Conner AN; Division of Gastroenterology, Hepatology, and Nutrition, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA., Pilat JM; Division of Gastroenterology, Hepatology, and Nutrition, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA., Jacobse J; Division of Gastroenterology, Hepatology, and Nutrition, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA., McNamara KM; Division of Gastroenterology, Hepatology, and Nutrition, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA.; Program in Cancer Biology, Vanderbilt University School of Medicine, Nashville, TN, USA., Allaman MM; Division of Gastroenterology, Hepatology, and Nutrition, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA., Raffa GA; Division of Gastroenterology, Hepatology, and Nutrition, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA., Gobert AP; Division of Gastroenterology, Hepatology, and Nutrition, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA.; Program in Cancer Biology, Vanderbilt University School of Medicine, Nashville, TN, USA.; Center for Mucosal Inflammation and Cancer, Vanderbilt University Medical Center, Nashville, TN, USA., Asim M; Division of Gastroenterology, Hepatology, and Nutrition, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA., Goettel JA; Division of Gastroenterology, Hepatology, and Nutrition, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA.; Department of Pathology, Microbiology, and Immunology, Vanderbilt University Medical Center, Nashville, TN, USA.; Program in Cancer Biology, Vanderbilt University School of Medicine, Nashville, TN, USA.; Center for Mucosal Inflammation and Cancer, Vanderbilt University Medical Center, Nashville, TN, USA., Choksi YA; Division of Gastroenterology, Hepatology, and Nutrition, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA.; Program in Cancer Biology, Vanderbilt University School of Medicine, Nashville, TN, USA.; Center for Mucosal Inflammation and Cancer, Vanderbilt University Medical Center, Nashville, TN, USA.; Veterans Affairs Tennessee Valley Healthcare System, Nashville, TN, USA., Beaulieu DB; Division of Gastroenterology, Hepatology, and Nutrition, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA., Dalal RL; Division of Gastroenterology, Hepatology, and Nutrition, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA., Horst SN; Division of Gastroenterology, Hepatology, and Nutrition, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA., Pabla BS; Division of Gastroenterology, Hepatology, and Nutrition, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA., Huo Y; Department of Electrical and Computer Engineering, Vanderbilt University, Nashville, TN, USA.; Department of Computer Science, Vanderbilt University, Nashville, TN, USA., Landman BA; Department of Electrical and Computer Engineering, Vanderbilt University, Nashville, TN, USA.; Department of Computer Science, Vanderbilt University, Nashville, TN, USA., Roland JT; Epithelial Biology Center, Vanderbilt University Medical Center, Nashville, TN, USA.; Department of Surgery, Vanderbilt University Medical Center, Nashville, TN, USA., Scoville EA; Division of Gastroenterology, Hepatology, and Nutrition, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA.; Center for Mucosal Inflammation and Cancer, Vanderbilt University Medical Center, Nashville, TN, USA., Schwartz DA; Division of Gastroenterology, Hepatology, and Nutrition, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA., Washington MK; Program in Chemical and Physical Biology, Vanderbilt University School of Medicine, Nashville, TN, USA.; Center for Mucosal Inflammation and Cancer, Vanderbilt University Medical Center, Nashville, TN, USA., Shyr Y; Center for Quantitative Sciences, Vanderbilt University Medical Center, Nashville, TN, USA.; Department of Biostatistics, Vanderbilt University Medical Center, Nashville, TN, USA., Wilson KT; Division of Gastroenterology, Hepatology, and Nutrition, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA. keith.wilson@vumc.org.; Department of Pathology, Microbiology, and Immunology, Vanderbilt University Medical Center, Nashville, TN, USA. keith.wilson@vumc.org.; Program in Cancer Biology, Vanderbilt University School of Medicine, Nashville, TN, USA. keith.wilson@vumc.org.; Center for Mucosal Inflammation and Cancer, Vanderbilt University Medical Center, Nashville, TN, USA. keith.wilson@vumc.org.; Veterans Affairs Tennessee Valley Healthcare System, Nashville, TN, USA. keith.wilson@vumc.org., Coburn LA; Division of Gastroenterology, Hepatology, and Nutrition, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA. lori.coburn@vumc.org.; Program in Cancer Biology, Vanderbilt University School of Medicine, Nashville, TN, USA. lori.coburn@vumc.org.; Center for Mucosal Inflammation and Cancer, Vanderbilt University Medical Center, Nashville, TN, USA. lori.coburn@vumc.org.; Veterans Affairs Tennessee Valley Healthcare System, Nashville, TN, USA. lori.coburn@vumc.org., Lau KS; Center for Quantitative Sciences, Vanderbilt University Medical Center, Nashville, TN, USA. ken.s.lau@vanderbilt.edu.; Epithelial Biology Center, Vanderbilt University Medical Center, Nashville, TN, USA. ken.s.lau@vanderbilt.edu.; Department of Cell and Developmental Biology, Vanderbilt University School of Medicine, Nashville, TN, USA. ken.s.lau@vanderbilt.edu.; Program in Chemical and Physical Biology, Vanderbilt University School of Medicine, Nashville, TN, USA. ken.s.lau@vanderbilt.edu.; Center for Mucosal Inflammation and Cancer, Vanderbilt University Medical Center, Nashville, TN, USA. ken.s.lau@vanderbilt.edu.; Department of Surgery, Vanderbilt University Medical Center, Nashville, TN, USA. ken.s.lau@vanderbilt.edu., Liu Q; Center for Quantitative Sciences, Vanderbilt University Medical Center, Nashville, TN, USA. qi.liu@vumc.org.; Department of Biostatistics, Vanderbilt University Medical Center, Nashville, TN, USA. qi.liu@vumc.org.

Publikováno v: Nature communications [Nat Commun] 2024 Aug 22; Vol. 15 (1), pp. 7204. Date of Electronic Publication: 2024 Aug 22.