SpanSeq: similarity-based sequence data splitting method for improved development and assessment of deep learning projects.

Autor: Ferrer Florensa, Alfred, Almagro Armenteros, Jose Juan, Nielsen, Henrik, Aarestrup, Frank Møller, Clausen, Philip Thomas Lanken Conradsen

Publikováno v: NAR Genomics & Bioinformatics; Sep2024, Vol. 6 Issue 3, p1-10, 10p

Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage

Autor: Hendriksen, Rene S., Munk, Patrick, Njage, Patrick, van Bunnik, Bram, McNally, Luke, Lukjancenko, Oksana, Röder, Timo, Nieuwenhuijse, David, Pedersen, Susanne Karlsmose, Kjeldgaard, Jette, Kaas, Rolf S., Clausen, Philip Thomas Lanken Conradsen, Vogt, Josef Korbinian, Leekitcharoenphon, Pimlapas, van de Schans, Milou G.M., Zuidema, Tina, de Roda Husman, Ana Maria, Rasmussen, Simon, Petersen, Bent, Bego, Artan, Rees, Catherine, Cassar, Susan, Coventry, Kris, Collignon, Peter, Allerberger, Franz, Rahube, Teddie O., Oliveira, Guilherme, Ivanov, Ivan, Vuthy, Yith, Sopheak, Thet, Yost, Christopher K., Ke, Changwen, Zheng, Huanying, Baisheng, Li, Jiao, Xiaoyang, Donado-Godoy, Pilar, Coulibaly, Kalpy Julien, Jergović, Matijana, Hrenovic, Jasna, Karpíšková, Renáta, Villacis, Jose Eduardo, Legesse, Mengistu, Eguale, Tadesse, Heikinheimo, Annamari, Malania, Lile, Nitsche, Andreas, Brinkmann, Annika, Saba, Courage Kosi Setsoafia, Kocsis, Bela, Solymosi, Norbert, Thorsteinsdottir, Thorunn R., Hatha, Abdulla Mohamed, Alebouyeh, Masoud, Morris, Dearbhaile, Cormican, Martin, O’Connor, Louise, Moran-Gilad, Jacob, Alba, Patricia, Battisti, Antonio, Shakenova, Zeinegul, Kiiyukia, Ciira, Ng’eno, Eric, Raka, Lul, Avsejenko, Jeļena, Bērziņš, Aivars, Bartkevics, Vadims, Penny, Christian, Rajandas, Heraa, Parimannan, Sivachandran, Haber, Malcolm Vella, Pal, Pushkar, Jeunen, Gert Jan, Gemmell, Neil, Fashae, Kayode, Holmstad, Rune, Hasan, Rumina, Shakoor, Sadia, Rojas, Maria Luz Zamudio, Wasyl, Dariusz, Bosevska, Golubinka, Kochubovski, Mihail, Radu, Cojocaru, Gassama, Amy, Radosavljevic, Vladimir, Wuertz, Stefan, Zuniga-Montanez, Rogelio, Tay, Moon Y.F., Gavačová, Dagmar, Pastuchova, Katarina, Truska, Peter, Trkov, Marija, Esterhuyse, Kerneels, Keddy, Karen, Cerdà-Cuéllar, Marta, Pathirage, Sujatha, Norrgren, Leif, Örn, Stefan, Larsson, D. G.Joakim, Heijden, Tanja Van der, Kumburu, Happiness Houka, Sanneh, Bakary, Bidjada, Pawou, Njanpop-Lafourcade, Berthe Marie, Nikiema-Pessinaba, Somtinda Christelle, Levent, Belkis, Meschke, John Scott, Beck, Nicola Koren, Van, Chinh Dang, Tran, Doan Minh Nguyen, Kwenda, Geoffrey, Tabo, Djim adjim, Wester, Astrid Louise, Cuadros-Orellana, Sara, Amid, Clara, Cochrane, Guy, Sicheritz-Ponten, Thomas, Schmitt, Heike, Alvarez, Jorge Raul Matheu, Aidara-Kane, Awa, Pamp, Sünje J., Lund, Ole, Hald, Tine, Woolhouse, Mark, Koopmans, Marion P., Vigre, Håkan, Petersen, Thomas Nordahl, Aarestrup, Frank M., Sub RIVM, dIRAS RA-I&I RA, One Health Microbieel, dIRAS RA-I&I I&I

Publikováno v: Nature Communications, Vol 10, Iss 1, Pp 1-12 (2019)
Dipòsit Digital de Documents de la UAB
Universitat Autònoma de Barcelona
Nature Communications 10 (2019) 1
Hendriksen, R S, Munk, P, Njage, P M K, van Bunnik, B, McNally, L, Lukjancenko, O, Röder, T, Nieuwenhuijse, D, Karlsmose Pedersen, S, Kjeldgaard, J S, Kaas, R S, Clausen, P T L C, Vogt, J K, Leekitcharoenphon, P, van de Schans, M G M, Zuidema, T, de Roda Husman, A M, Rasmussen, S, Petersen, B, Global, S S P C, Amid, C, Cochrane, G, Sicheritz-Pontén, T, Schmitt, H, Alvarez, J R M, Aidara-Kane, A, Pamp, S J, Lund, O, Hald, T, Woolhouse, M, Koopmans, M P, Vigre, H, Petersen, T N & Aarestrup, F M 2019, ' Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage ', Nature Communications, vol. 10, 1124 . https://doi.org/10.1038/s41467-019-08853-3
IRTA Pubpro. Open Digital Archive
Institut de Recerca i Tecnologia Agroalimentàries (IRTA)
Hendriksen, R S, Munk, P, Njage, P, van Bunnik, B, McNally, L, Lukjancenko, O, Röder, T, Nieuwenhuijse, D, Pedersen, S K, Kjeldgaard, J, Kaas, R S, Clausen, P T L C, Vogt, J K, Leekitcharoenphon, P, van de Schans, M G M, Zuidema, T, de Roda Husman, A M, Rasmussen, S, Petersen, B, Amid, C, Cochrane, G, Sicheritz-Ponten, T, Schmitt, H, Alvarez, J R M, Aidara-Kane, A, Pamp, S J, Lund, O, Hald, T, Woolhouse, M, Koopmans, M P, Vigre, H & Petersen, T N & Aarestrup, F M 2019, ' Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage ', Nature Communications, vol. 10, 1124 . https://doi.org/10.1038/s41467-019-08853-3
Nature Communications, 10(1)
Nature Communications
Nature Communications, 10:1124. Nature Publishing Group
Nature Communications, 10(1124). Nature Publishing Group

Publisher's version (útgefin grein)
Antimicrobial resistance (AMR) is a serious threat to global public health, but obtaining representative data on AMR for healthy human populations is difficult. Here, we use metagenomic analysis of untreated

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https://doaj.org/article/e1cb1167bef748e5b629d0ee4367b54a

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