Zobrazeno 1 - 10
of 22
pro vyhledávání: '"Claude Alain H. Roten"'
Publikováno v:
Bioinformatics, vol. 22, no. 9, pp. 1072-1079
Motivation: Lateral gene transfer is a major mechanism contributing to bacterial genome dynamics and pathovar emergence via pathogenicity island (PAI) spreading. However, since few of these genomic exchanges are experimentally reproducible, it is dif
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::937b36059be157694846987037e7febc
https://doi.org/10.1093/bioinformatics/bti793
https://doi.org/10.1093/bioinformatics/bti793
Autor:
Claude-Alain H. Roten, Lionel Guy
Publikováno v:
Gene. 340:45-52
Selective pressures related to gene function and chromosomal architecture are acting on genome sequences and can be revealed, for instance, by appropriate genometric methods. Cumulative nucleotide skew analyses, i.e., GC, TA, and ORF orientation skew
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c9cfc32fb940d54091d477b88045377a
https://doi.org/10.1016/j.gene.2004.06.056
https://doi.org/10.1016/j.gene.2004.06.056
Autor:
Laurent-Bernard Fay, Robin Marchant, Dimitri Karamata, Gabriel Borruat, Claude-Alain H. Roten
Publikováno v:
Journal of Chromatography A. 922:219-224
The presence in the environment of diaminopimelic acid (DAP), a specific eubacterial marker, can be attributed to that of bacteria. We report a reliable and highly sensitive method for the quantification of DAP in calcareous rocks. It consists of aci
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::b2c63dc60b8aa2d8d7d1b3fdc06c1c6d
https://doi.org/10.1016/s0021-9673(01)00934-7
https://doi.org/10.1016/s0021-9673(01)00934-7
Publikováno v:
Analytical Biochemistry. 291:11-16
We describe a quantitative assay for diaminopimelic acid (DAP) in urine. It involves (i) hydrolysis of urine samples, (ii) purification by several different liquid chromatography steps, and (iii) analysis by high-performance liquid chromatography on
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::86f8bb2b291576ec18661b82babcd8a3
https://doi.org/10.1006/abio.2001.5016
https://doi.org/10.1006/abio.2001.5016
Publikováno v:
PLoS ONE
PLoS ONE, Vol 4, Iss 9, p e6531 (2009)
PLoS ONE, Vol 4, Iss 9, p e6531 (2009)
In E. coli, 10 to 15% of growing bacteria produce dimeric chromosomes during DNA replication. These dimers are resolved by XerC and XerD, two tyrosine recombinases that target the 28-nucleotide motif (dif) associated with the chromosome's replication
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::63101e5e96ffdb52ef534481a989ab7c
https://pubmed.ncbi.nlm.nih.gov/19727445
https://pubmed.ncbi.nlm.nih.gov/19727445
Autor:
François Collyn, Philippe Moreillon, Masanobu Nakata, Marisa Haenni, Andreas Podbielski, Lionel Guy, Alexandre Panchaud, Claude Alain H. Roten
Publikováno v:
BMC genomics, vol. 10, pp. 198
BMC Genomics
BMC Genomics, BioMed Central, 2009, 10, pp.198. ⟨10.1186/1471-2164-10-198⟩
BMC Genomics, Vol 10, Iss 1, p 198 (2009)
BMC Genomics
BMC Genomics, BioMed Central, 2009, 10, pp.198. ⟨10.1186/1471-2164-10-198⟩
BMC Genomics, Vol 10, Iss 1, p 198 (2009)
Background The increasing number of completely sequenced bacterial genomes allows comparing their architecture and genetic makeup. Such new information highlights the crucial role of lateral genetic exchanges in bacterial evolution and speciation. Re
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c84154b66368296195f12930c06798eb
https://serval.unil.ch/notice/serval:BIB_DE1F2114471F
https://serval.unil.ch/notice/serval:BIB_DE1F2114471F
Publikováno v:
Journal of General Microbiology. 137:951-962
Summary: Thermosensitive mutants of Bacillus subtilis deficient in peptidoglycan synthesis were screened for mutations in the meso-diaminopimelate (ld-A2pm) metabolic pathway. Mutations in two out of five relevant linkage groups, IssB and IssD, were
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::34fa40fd470897ce3e1d080440274cf4
https://doi.org/10.1099/00221287-137-4-951
https://doi.org/10.1099/00221287-137-4-951
Publikováno v:
FEMS Microbiology Letters, vol. 271, no. 2, pp. 187-192
Nucleotide composition analyses of bacterial genomes such as cumulative GC skew highlight the atypical, strongly asymmetric architecture of the recently published chromosome of Idiomarina loihiensis L2TR, suggesting that an inversion of a 600-kb chro
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::011d89f901bfb88a4cee571e349c621c
https://serval.unil.ch/notice/serval:BIB_84FABFF05093
https://serval.unil.ch/notice/serval:BIB_84FABFF05093
Publikováno v:
BMC Microbiology
BMC Microbiology, Vol 5, Iss 1, p 60 (2005)
BMC Microbiology, vol. 5, pp. 60
BMC Microbiology, Vol 5, Iss 1, p 60 (2005)
BMC Microbiology, vol. 5, pp. 60
BackgroundAnalysis of the first reported complete genome sequence ofBifidobacterium longumNCC2705, an actinobacterium colonizing the gastrointestinal tract, uncovered its proteomic relatedness toStreptomyces coelicolorandMycobacterium tuberculosis. H
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::32300b63b8956d4800589c0fc888b936
https://doi.org/10.1186/1471-2180-5-60
https://doi.org/10.1186/1471-2180-5-60
Publikováno v:
Nucleic acids research. 30(1)
The ever increasing rate at which whole genome sequences are becoming accessible to the scientific community has created an urgent need for tools enabling comparison of chromosomes of different species. We have applied biometric methods to available
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b7567578b243db01e2cc5f5f0e868b70
https://pubmed.ncbi.nlm.nih.gov/11752276
https://pubmed.ncbi.nlm.nih.gov/11752276