Zobrazeno 1 - 10
of 14
pro vyhledávání: '"Clarence Yu Cheng"'
Publikováno v:
eLife, Vol 4 (2015)
Externí odkaz:
https://doaj.org/article/570ffd69a4ae427b99fa26b754d06aaa
Publikováno v:
eLife, Vol 4 (2015)
Accelerating discoveries of non-coding RNA (ncRNA) in myriad biological processes pose major challenges to structural and functional analysis. Despite progress in secondary structure modeling, high-throughput methods have generally failed to determin
Externí odkaz:
https://doaj.org/article/12f42d281a2e440fb88bdf5da8cab631
Autor:
Joanna Sarzynska, David M.J. Lilley, Yi Xiao, Peinan Zhao, Michal J. Boniecki, Dinshaw J. Patel, Astha Joshi, Yuanzhe Zhou, Radoslaw Pluta, Clarence Yu Cheng, Lin Huang, Fang-Chieh Chou, Zhichao Miao, François Major, Li-Zhen Sun, Chenhan Zhao, Marcin Magnus, Andrey Krokhotin, Rhiju Das, Zhenzhen Zhang, Joseph D. Yesselman, Jakub Wiedemann, Yijin Liu, Olivier Mailhot, Xiaojun Xu, Andrew M. Watkins, Robert T. Batey, Yangwei Jiang, Caleb Geniesse, Maciej Antczak, Adriana Żyła, Siqi Tian, Aiming Ren, Nikolay V. Dokholyan, Thomas H. Mann, Tomasz Zok, Janusz M. Bujnicki, Shi-Jie Chen, Ryszard W. Adamiak, Eric Westhof, Barbara L. Golden, Jian Wang, Feng Ding, Marta Szachniuk, Mariusz Popenda, Paweł Piątkowski, Dong Zhang, Yi Cheng, Yi Zhang, Jun Wang
Publikováno v:
RNA
RNA, Cold Spring Harbor Laboratory Press, 2020, 26 (8), pp.982-995. ⟨10.1261/rna.075341.120⟩
RNA, Cold Spring Harbor Laboratory Press, 2020, 26 (8), pp.982-995. ⟨10.1261/rna.075341.120⟩
International audience; RNA-Puzzles is a collective endeavor dedicated to the advancement and improvement of RNA 3D structure prediction. With agreement from crystallographers, the RNA structures are predicted by various groups before the publication
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ce737604dde88ce4f4cd65a4a5aab7cf
https://hal.archives-ouvertes.fr/hal-02966062
https://hal.archives-ouvertes.fr/hal-02966062
Autor:
Laura Y. Kim, Clarence Yu Cheng, Paul V. Ruijgrok, Rhiju Das, Gregory M. Alushin, Zev Bryant, Tosan Omabegho, Pinar S. Gurel
Publikováno v:
Nature nanotechnology
Engineering biomolecular motors can provide direct tests of structure-function relationships and customized components for controlling molecular transport in artificial systems or in living cells. In previous work, synthetic nucleic acid motors have
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::175bf568dc721dac6b367e7df3e3d5df
https://doi.org/10.1038/s41565-017-0005-y
https://doi.org/10.1038/s41565-017-0005-y
Publikováno v:
Proceedings of the National Academy of Sciences. 114:9876-9881
Despite the critical roles RNA structures play in regulating gene expression, sequencing-based methods for experimentally determining RNA base pairs have remained inaccurate. Here, we describe a multidimensional chemical mapping method called M2-seq
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::dbc6ac7efa5c12ea07e2be09646cc053
https://doi.org/10.1073/pnas.1619897114
https://doi.org/10.1073/pnas.1619897114
Autor:
Greggory M. Rice, Dong Zhang, Yi Xiao, François Major, Joseph A. Piccirilli, Thomas H. Mann, Fang-Chieh Chou, Marcin Biesiada, Clarence Yu Cheng, Feng Ding, Arpit Tandon, Dinshaw J. Patel, Kevin M. Weeks, Alexander J. Becka, Joanna Sarzynska, John SantaLucia, Ryszard W. Adamiak, Kalli Kappel, Rhiju Das, Wipapat Kladwang, Zhichao Miao, Michal J. Boniecki, Robert T. Batey, Katarzyna J. Purzycka, Tomasz Zok, Caleb Geniesse, Aiming Ren, Wayne K. Dawson, Maciej Antczak, Janusz M. Bujnicki, Shi-Jie Chen, Andrey Krokhotin, Jian Wang, Katarzyna Pachulska-Wieczorek, Siqi Tian, Nikolay V. Dokholyan, Xiaojun Xu, Marcin Magnus, Grzegorz Łach, Marta Szachniuk, Stanislaw Dunin-Horkawicz, Jeremiah J. Trausch, Eric Westhof, Benfeard Williams, Mariusz Popenda, Adrian R. Ferré-D'Amaré
Publikováno v:
RNA
RNA, Cold Spring Harbor Laboratory Press, 2017, 23 (5), pp.655-672. ⟨10.1261/rna.060368.116⟩
RNA, Cold Spring Harbor Laboratory Press, 2017, 23 (5), pp.655-672. ⟨10.1261/rna.060368.116⟩
RNA-Puzzles is a collective experiment in blind 3D RNA structure prediction. We report here a third round of RNA-Puzzles. Five puzzles, 4, 8, 12, 13, 14, all structures of riboswitch aptamers and puzzle 7, a ribozyme structure, are included in this r
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c02529620f2174f01acae09e88a752f7
https://hal.archives-ouvertes.fr/hal-02171291
https://hal.archives-ouvertes.fr/hal-02171291
Autor:
Tosan Omabegho, Pinar S. Gurel, Rhiju Das, Laura Y. Kim, Clarence Yu Cheng, Gregory M. Alushin, Paul V. Ruijgrok, Zev Bryant
Publikováno v:
Nature Nanotechnology. 13:870-870
An incorrect Supplementary Information file was originally published. The file has been replaced with the correct one.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::050c15408f8999409dbf5cea906af4a1
https://doi.org/10.1038/s41565-017-0028-4
https://doi.org/10.1038/s41565-017-0028-4
Publikováno v:
eLife, Vol 4 (2015)
Accelerating discoveries of non-coding RNA (ncRNA) in myriad biological processes pose major challenges to structural and functional analysis. Despite progress in secondary structure modeling, high-throughput methods have generally failed to determin
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::57e4b0ea297725f21a8648e40666862e
https://doi.org/10.7554/elife.07600
https://doi.org/10.7554/elife.07600
Publikováno v:
Methods in enzymology. 553
Reliable modeling of RNA tertiary structures is key to both understanding these structures' roles in complex biological machines and to eventually facilitating their design for molecular computing and robotics. In recent years, a concerted effort to
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=pmid________::833a047dedec8f9d443689e29215d8b5
https://pubmed.ncbi.nlm.nih.gov/25726460
https://pubmed.ncbi.nlm.nih.gov/25726460