An open dataset of Plasmodium falciparum genome variation in 7,000 worldwide samples [version 2; peer review: 2 approved]

Autor: MalariaGEN, Ambroise Ahouidi, Mozam Ali, Jacob Almagro-Garcia, Alfred Amambua-Ngwa, Chanaki Amaratunga, Roberto Amato, Lucas Amenga-Etego, Ben Andagalu, Tim J. C. Anderson, Voahangy Andrianaranjaka, Tobias Apinjoh, Cristina Ariani, Elizabeth A Ashley, Sarah Auburn, Gordon A. Awandare, Hampate Ba, Vito Baraka, Alyssa E. Barry, Philip Bejon, Gwladys I. Bertin, Maciej F. Boni, Steffen Borrmann, Teun Bousema, Oralee Branch, Peter C. Bull, George B. J. Busby, Thanat Chookajorn, Kesinee Chotivanich, Antoine Claessens, David Conway, Alister Craig, Umberto D'Alessandro, Souleymane Dama, Nicholas PJ Day, Brigitte Denis, Mahamadou Diakite, Abdoulaye Djimdé, Christiane Dolecek, Arjen M Dondorp, Chris Drakeley, Eleanor Drury, Patrick Duffy, Diego F. Echeverry, Thomas G. Egwang, Berhanu Erko, Rick M. Fairhurst, Abdul Faiz, Caterina A. Fanello, Mark M. Fukuda, Dionicia Gamboa, Anita Ghansah, Lemu Golassa, Sonia Goncalves, William L. Hamilton, G. L. Abby Harrison, Lee Hart, Christa Henrichs, Tran Tinh Hien, Catherine A. Hill, Abraham Hodgson, Christina Hubbart, Mallika Imwong, Deus S. Ishengoma, Scott A. Jackson, Chris G. Jacob, Ben Jeffery, Anna E. Jeffreys, Kimberly J. Johnson, Dushyanth Jyothi, Claire Kamaliddin, Edwin Kamau, Mihir Kekre, Krzysztof Kluczynski, Theerarat Kochakarn, Abibatou Konaté, Dominic P. Kwiatkowski, Myat Phone Kyaw, Pharath Lim, Chanthap Lon, Kovana M. Loua, Oumou Maïga-Ascofaré, Cinzia Malangone, Magnus Manske, Jutta Marfurt, Kevin Marsh, Mayfong Mayxay, Alistair Miles, Olivo Miotto, Victor Mobegi, Olugbenga A. Mokuolu, Jacqui Montgomery, Ivo Mueller, Paul N. Newton, Thuy Nguyen, Thuy-Nhien Nguyen, Harald Noedl, Francois Nosten, Rintis Noviyanti, Alexis Nzila, Lynette I. Ochola-Oyier, Harold Ocholla, Abraham Oduro, Irene Omedo, Marie A. Onyamboko, Jean-Bosco Ouedraogo, Kolapo Oyebola, Richard D. Pearson, Norbert Peshu, Aung Pyae Phyo, Chris V. Plowe, Ric N. Price, Sasithon Pukrittayakamee, Milijaona Randrianarivelojosia, Julian C. Rayner, Pascal Ringwald, Kirk A. Rockett, Katherine Rowlands, Lastenia Ruiz, David Saunders, Alex Shayo, Peter Siba, Victoria J. Simpson, Jim Stalker, Xin-zhuan Su, Colin Sutherland, Shannon Takala-Harrison, Livingstone Tavul, Vandana Thathy, Antoinette Tshefu, Federica Verra, Joseph Vinetz, Thomas E. Wellems, Jason Wendler, Nicholas J. White, Ian Wright, William Yavo, Htut Ye

Publikováno v: Wellcome Open Research, Vol 6 (2021)

MalariaGEN is a data-sharing network that enables groups around the world to work together on the genomic epidemiology of malaria. Here we describe a new release of curated genome variation data on 7,000 Plasmodium falciparum samples from MalariaGEN

Externí odkaz: https://doaj.org/article/6086e8979d4f45dfad3364f4d4f4724a

A standardized framework for representation of ancestry data in genomics studies, with application to the NHGRI-EBI GWAS Catalog

Autor: Joannella Morales, Danielle Welter, Emily H. Bowler, Maria Cerezo, Laura W. Harris, Aoife C. McMahon, Peggy Hall, Heather A. Junkins, Annalisa Milano, Emma Hastings, Cinzia Malangone, Annalisa Buniello, Tony Burdett, Paul Flicek, Helen Parkinson, Fiona Cunningham, Lucia A. Hindorff, Jacqueline A. L. MacArthur

Publikováno v: Genome Biology, Vol 19, Iss 1, Pp 1-10 (2018)

Abstract The accurate description of ancestry is essential to interpret, access, and integrate human genomics data, and to ensure that these benefit individuals from all ancestral backgrounds. However, there are no established guidelines for the repr

Externí odkaz: https://doaj.org/article/b53a242795714ed48bb6d40e8fcf0f44

B cell receptor analysis using single cell sequencing reveals preferential antibody expression in a HIV candidate vaccine study

Autor: Irene Bassano, Simon Watson, Cinzia Malangone, Christopher L. Pinder, Kostas Paschos, Hannah M. Cheeseman, Robin J. Shattock, Paul Kellam

HIV (human immunodeficiency virus) is a virus that infects different cell types in the immune system. While different monoclonal antibodies have been identified, because of the antigenic diversity of HIV, defining broad neutralising antibodies (bnAbs

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::c59cb68e96bb914b862cb7610d43b402
https://doi.org/10.1101/2023.04.18.23288724

Genetic surveillance in the Greater Mekong subregion and South Asia to support malaria control and elimination

Autor: Jordi Landier, Abdullah Abu Sayeed, Seila Suon, Kim-Tuyen Nguyen, Kate Rowlands, Frank Smithuis, Chanon Kunasol, Chanaki Amaratunga, Sasithon Pukrittayakamee, Keobouphaphone Chindavongsa, Jacob Almagro Garcia, Richard D. Pearson, Mozam Ali, Xin Hui S Chan, Katie Love, Naomi Park, Pascal Ringwald, Richard J. Maude, Cristina V. Ariani, Mehul Dhorda, Marie A. Onyamboko, Daniel M. Parker, Tin Maung Hlaing, Scott Goodwin, Namfon Kotanan, Thang Ngo Duc, Gilles Delmas, Huy Rekol, Rick M. Fairhurst, Victoria Simpson, Arjen M. Dondorp, Le Thanh Dong, Bouasy Hongvanthong, Tran Tinh Hien, Rapeephan R. Maude, Thomas J. Peto, Shavanthi Rajatileka, Roberto Amato, Thanat Chookajorn, Ben Jeffery, Anna E. Jeffreys, Nicole Zdrojewski, Caterina I. Fanello, Eleanor Drury, Mihir Kekre, Myo Thant, John Sillitoe, Olivo Miotto, Aung Myint Thu, James J Callery, Subrata Baidya, Paul N. Newton, Ranitha Vongpromek, Prativa K Behera, Borimas Hanboonkunupakarn, Rob W. van der Pluijm, Jim Stalker, Anupkumar R. Anvikar, Sonexay Phalivong, Dawn Muddyman, Nguyen Thuy-Nhien, Christina Hubbart, Rithea Leang, Lorenz von Seidlein, Nicholas P. J. Day, Phrutsamon Wongnak, Jonathan Keatley, Hoa Nguyen, Cinzia Malangone, Parthasarathi Satpathi, Abul Faiz, Dysoley Lek, François Nosten, Christopher G Jacob, Rupam Tripura, Sara E. Canavati, Huynh Hong Quang, Kirk A. Rockett, Neena Valecha, Thuy Nguyen, Kimberly J. Johnson, Tran Minh Nhat, Didar Uddin, Caroline O. Buckee, Akhter ul Islam, Podjanee Jittamala, Mayfong Mayxay, Amir Hossain, Viengxay Vanisaveth, Elizabeth A. Ashley, Dominic P. Kwiatkowski, Sanghamitra Satpathi, Aung Pyae Phyo, Amar Tripura, Nguyen Hoang Chau, Sónia Gonçalves, Khin Lin, Cheah Huch

Publikováno v: eLife
eLife, eLife Sciences Publication, 2021, 10, pp.e62997. ⟨10.7554/elife.62997⟩
eLife, 2021, 10, pp.e62997. ⟨10.7554/elife.62997⟩
eLife, Vol 10 (2021)

Author(s): Jacob, Christopher G; Thuy-Nhien, Nguyen; Mayxay, Mayfong; Maude, Richard J; Quang, Huynh Hong; Hongvanthong, Bouasy; Vanisaveth, Viengxay; Ngo Duc, Thang; Rekol, Huy; van der Pluijm, Rob; von Seidlein, Lorenz; Fairhurst, Rick; Nosten, Fra

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5316f82b160e00468fb81cc7d9f11976
https://www.hal.inserm.fr/inserm-03451958

Author response: Genetic surveillance in the Greater Mekong subregion and South Asia to support malaria control and elimination

Autor: Jordi Landier, Frank Smithuis, Huy Rekol, Amar Tripura, Rapeephan R. Maude, Keobouphaphone Chindavongsa, Thomas J. Peto, Khin Lin, Dominic P. Kwiatkowski, Cristina V. Ariani, Naomi Park, Cheah Huch, Jacob Almagro Garcia, Sanghamitra Satpathi, Kimberly J. Johnson, Daniel M. Parker, Dawn Muddyman, Rithea Leang, Arjen M. Dondorp, Anna E. Jeffreys, Tin Maung Hlaing, Richard D. Pearson, Hoa Nguyen, Le Thanh Dong, Caroline O. Buckee, Scott Goodwin, Seila Suon, Ben Jeffery, Mihir Kekre, Caterina I. Fanello, Rupam Tripura, Kate Rowlands, Kirk A. Rockett, Rob W. van der Pluijm, Rick M. Fairhurst, Sonexay Phalivong, Namfon Kotanan, Sasithon Pukrittayakamee, Abdullah Abu Sayeed, Thang Ngo Duc, Nicholas P. J. Day, Shavanthi Rajatileka, Aung Myint Thu, James J Callery, Huynh Hong Quang, Eleanor Drury, Victoria Simpson, Myo Thant, Sara E. Canavati, Abul Faiz, Akhter ul Islam, Dysoley Lek, Christopher G Jacob, Jim Stalker, Anupkumar R. Anvikar, Chanon Kunasol, Lorenz von Seidlein, Podjanee Jittamala, Mayfong Mayxay, Elizabeth A. Ashley, Subrata Baidya, Paul N. Newton, Prativa K Behera, Parthasarathi Satpathi, François Nosten, Tran Minh Nhat, Borimas Hanboonkunupakarn, Pascal Ringwald, Neena Valecha, Thuy Nguyen, Didar Uddin, Christina Hubbart, Amir Hossain, Cinzia Malangone, Bouasy Hongvanthong, Aung Pyae Phyo, Tran Tinh Hien, Nicole Zdrojewski, Kim-Tuyen Nguyen, Ranitha Vongpromek, Chanaki Amaratunga, Nguyen Hoang Chau, Katie Love, Marie A. Onyamboko, Richard J. Maude, Xin Hui S Chan, Nguyen Thuy-Nhien, Phrutsamon Wongnak, Sónia Gonçalves, Jonathan Keatley, Mozam Ali, Mehul Dhorda, Roberto Amato, John Sillitoe, Olivo Miotto, Gilles Delmas, Viengxay Vanisaveth, Thanat Chookajorn

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::7d91e3952685b2615a5968976612ae22
https://doi.org/10.7554/elife.62997.sa2