Zobrazeno 1 - 10
of 66
pro vyhledávání: '"Cindy J. Castelle"'
Autor:
Alexander L. Jaffe, Corinne Bardot, Anne-Hélène Le Jeune, Jett Liu, Jonathan Colombet, Fanny Perrière, Hermine Billard, Cindy J. Castelle, Anne-Catherine Lehours, Jillian F. Banfield
Publikováno v:
Microbiome, Vol 11, Iss 1, Pp 1-18 (2023)
Abstract Background Permanently stratified lakes contain diverse microbial communities that vary with depth and so serve as useful models for studying the relationships between microbial community structure and geochemistry. Recent work has shown tha
Externí odkaz:
https://doaj.org/article/f70c5ceac0e24f28ae3dce6238790527
Publikováno v:
BMC Biology, Vol 20, Iss 1, Pp 1-17 (2022)
Abstract Background Archaea play fundamental roles in the environment, for example by methane production and consumption, ammonia oxidation, protein degradation, carbon compound turnover, and sulfur compound transformations. Recent genomic analyses h
Externí odkaz:
https://doaj.org/article/d95c1dc4c55444e49c93c2d22cd3cfee
Autor:
Alexander L. Jaffe, Cindy J. Castelle, Paula B. Matheus Carnevali, Simonetta Gribaldo, Jillian F. Banfield
Publikováno v:
BMC Biology, Vol 18, Iss 1, Pp 1-15 (2020)
Abstract Background A unifying feature of the bacterial Candidate Phyla Radiation (CPR) is a limited and highly variable repertoire of biosynthetic capabilities. However, the distribution of metabolic traits across the CPR and the evolutionary proces
Externí odkaz:
https://doaj.org/article/bbc0f7f123d148e49f57f8b96e63a274
Autor:
Cindy J. Castelle, Raphaël Méheust, Alexander L. Jaffe, Kiley Seitz, Xianzhe Gong, Brett J. Baker, Jillian F. Banfield
Publikováno v:
Frontiers in Microbiology, Vol 12 (2021)
DPANN are small-celled archaea that are generally predicted to be symbionts, and in some cases are known episymbionts of other archaea. As the monophyly of the DPANN remains uncertain, we hypothesized that proteome content could reveal relationships
Externí odkaz:
https://doaj.org/article/847dd35558ce4c81890d541e64a464c8
Publikováno v:
Nature Communications, Vol 10, Iss 1, Pp 1-12 (2019)
Recent studies have identified a large, phylogenetically distinct clade of bacteria, the candidate phyla radiation (CPR). Here, Méheust and colleagues analyze almost 3600 genomes to characterize the protein family content of CPR versus other bacteri
Externí odkaz:
https://doaj.org/article/9027ad3415b142aa9421191fc392b6c5
Autor:
Paula B. Matheus Carnevali, Frederik Schulz, Cindy J. Castelle, Rose S. Kantor, Patrick M. Shih, Itai Sharon, Joanne M. Santini, Matthew R. Olm, Yuki Amano, Brian C. Thomas, Karthik Anantharaman, David Burstein, Eric D. Becraft, Ramunas Stepanauskas, Tanja Woyke, Jillian F. Banfield
Publikováno v:
Nature Communications, Vol 10, Iss 1, Pp 1-15 (2019)
Most cyanobacteria are oxygenic photoautotrophs, and fermenters under dark anoxic conditions. Here, the authors analyse genomic sequences of related uncultivated bacteria, inferring their metabolic potential, and supporting that their common ancestor
Externí odkaz:
https://doaj.org/article/a96e5493250f4d98abb458a703eb50d8
Autor:
Christian M. K. Sieber, Blair G. Paul, Cindy J. Castelle, Ping Hu, Susannah G. Tringe, David L. Valentine, Gary L. Andersen, Jillian F. Banfield
Publikováno v:
mBio, Vol 10, Iss 6 (2019)
ABSTRACT The candidate phyla radiation (CPR) comprises a large monophyletic group of bacterial lineages known almost exclusively based on genomes obtained using cultivation-independent methods. Within the CPR, Gracilibacteria (BD1-5) are particularly
Externí odkaz:
https://doaj.org/article/09bed20fa5fe4743a01df2d9cf72f9a1
Autor:
Zheng-Shuang Hua, Yan-Ni Qu, Qiyun Zhu, En-Min Zhou, Yan-Ling Qi, Yi-Rui Yin, Yang-Zhi Rao, Ye Tian, Yu-Xian Li, Lan Liu, Cindy J. Castelle, Brian P. Hedlund, Wen-Sheng Shu, Rob Knight, Wen-Jun Li
Publikováno v:
Nature Communications, Vol 9, Iss 1, Pp 1-11 (2018)
The phylum of archaea Aigarchaeota is poorly characterized due to limited genomic sampling. Here, Hua and colleagues use genome-resolved metagenome sequencing to reconstruct six hot spring strains of Aigarchaeota and then infer their metabolism and e
Externí odkaz:
https://doaj.org/article/0ae3a0c02a264a15b8733a21f244952d
Autor:
Xiaobo Liu, Meng Li, Cindy J. Castelle, Alexander J. Probst, Zhichao Zhou, Jie Pan, Yang Liu, Jillian F. Banfield, Ji-Dong Gu
Publikováno v:
Microbiome, Vol 6, Iss 1, Pp 1-16 (2018)
Abstract Background As a recently discovered member of the DPANN superphylum, Woesearchaeota account for a wide diversity of 16S rRNA gene sequences, but their ecology, evolution, and metabolism remain largely unknown. Results Here, we assembled 133
Externí odkaz:
https://doaj.org/article/1496b656471842cca43a5788af2d7ce3
Autor:
Karthik Anantharaman, Christopher T. Brown, Laura A. Hug, Itai Sharon, Cindy J. Castelle, Alexander J. Probst, Brian C. Thomas, Andrea Singh, Michael J. Wilkins, Ulas Karaoz, Eoin L. Brodie, Kenneth H. Williams, Susan S. Hubbard, Jillian F. Banfield
Publikováno v:
Nature Communications, Vol 7, Iss 1, Pp 1-11 (2016)
Microorganisms from the terrestrial subsurface are understudied. Here, Anantharamanet al. analyse aquifer sediments and groundwater by genome-resolved metagenomics and reconstruct 2,540 genomes representing the majority of known bacterial phyla as we
Externí odkaz:
https://doaj.org/article/62585d395a3e446a9c1f50e7986ea633