CottonGen: The Community Database for Cotton Genomics, Genetics, and Breeding Research

Autor: Jing Yu, Sook Jung, Chun-Huai Cheng, Taein Lee, Ping Zheng, Katheryn Buble, James Crabb, Jodi Humann, Heidi Hough, Don Jones, J. Todd Campbell, Josh Udall, Dorrie Main

Publikováno v: Plants, Vol 10, Iss 12, p 2805 (2021)

Over the last eight years, the volume of whole genome, gene expression, SNP genotyping, and phenotype data generated by the cotton research community has exponentially increased. The efficient utilization/re-utilization of these complex and large dat

Externí odkaz: https://doaj.org/article/60cd0eefcffc44458cb2c8513f38282c

Tripal v3: an ontology-based toolkit for construction of FAIR biological community databases

Autor: Ming Chen, F. Alex Feltus, Jill L. Wegrzyn, Margaret Staton, Helena Rasche, Abdullah Almsaeed, Lacey-Anne Sanderson, Shawna Spoor, Chun-Huai Cheng, Kirstin E. Bett, Stephen P. Ficklin, Sook Jung, Anthony Bretaudeau, Bradford Condon, Dorrie Main

Publikováno v: Database: The Journal of Biological Databases and Curation
Database-The journal of Biological Databases and Curation
Database-The journal of Biological Databases and Curation, Oxford University Press, 2019, 2019, pp.baz077. ⟨10.1093/database/baz077⟩
Database-The journal of Biological Databases and Curation, 2019, 2019, pp.baz077. ⟨10.1093/database/baz077⟩

Community biological databases provide an important online resource for both public and private data, analysis tools and community engagement. These sites house genomic, transcriptomic, genetic, breeding and ancillary data for specific species, famil

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3b15c223943d38a51320439f2bd1ce3e
http://europepmc.org/articles/PMC6643302

15 years of GDR: New data and functionality in the Genome Database for Rosaceae

Autor: Sook Jung, Jing Yu, Morgan Frank, Albert G. Abbott, Dorrie Main, Jill L. Wegrzyn, Margaret Staton, James R. McFerson, Stephen P. Ficklin, Mercy A. Olmstead, Kate Evans, Chun-Huai Cheng, Cameron Peace, Ping Zheng, Lisa W. DeVetter, Kristin Scott, Jodi L. Humann, Heidi Hough, Sushan Ru, Taein Lee, Ksenija Gasic, Katheryn Buble, Michael Coe

Publikováno v: Nucleic Acids Research

The Genome Database for Rosaceae (GDR, https://www.rosaceae.org) is an integrated web-based community database resource providing access to publicly available genomics, genetics and breeding data and data-mining tools to facilitate basic, translation

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::dd6d858dd514d504e2dc09223c171725
https://pubmed.ncbi.nlm.nih.gov/30357347

The Genome Database for Rosaceae (GDR): year 10 update

Autor: Il-Hyung Cho, Ping Zheng, Mercy A. Olmstead, Chun-Huai Cheng, Dorrie Main, Cameron Peace, Sushan Ru, Kate Evans, Taein Lee, Lukas A. Mueller, Aureliano Bombarely, Sook Jung, Jing Yu, Anna V. Blenda, Albert G. Abbott, Stephen P. Ficklin

Publikováno v: Nucleic Acids Research

The Genome Database for Rosaceae (GDR, http:/www.rosaceae.org), the long-standing central repository and data mining resource for Rosaceae research, has been enhanced with new genomic, genetic and breeding data, and improved functionality. Whole geno

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5b1fc4c4d6e4423c06a03413eabe03bc
http://europepmc.org/articles/PMC3965003

Chado use case: storing genomic, genetic and breeding data of Rosaceae and Gossypium crops in Chado

Autor: Chun-Huai Cheng, Jing Yu, Taein Lee, Dorrie Main, Stephen P. Ficklin, Sook Jung

Publikováno v: Database: The Journal of Biological Databases and Curation

The Genome Database for Rosaceae (GDR) and CottonGen are comprehensive online data repositories that provide access to integrated genomic, genetic and breeding data through search, visualization and analysis tools for Rosaceae crops and Gossypium (co

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2c44a89268d4e6bd9184ee31f136c5d8
http://europepmc.org/articles/PMC4795932