Zobrazeno 1 - 10
of 94
pro vyhledávání: '"Chun Hong Yoon"'
Autor:
Johannes P. Blaschke, Robert Bolotovsky, Aaron S. Brewster, Jeffrey Donatelli, Antoine DuJardin, Wu-chun Feng, Vidya Ganapati, Wilko Kroeger, Derek Mendez, Peter McCorquodale, Seema Mirchandaney, Christopher P. O'Grady, Daniel W. Paley, Amedeo Perazzo, Frederic P. Poitevin, Billy K. Poon, Vinay B. Ramakrishnaiah, Nicholas K. Sauter, Niteya Shah, Elliott Slaughter, Christine Sweeney, Daniel Tchoń, Monarin Uervirojnangkoorn, Felix Wittwer, Michael E. Wall, Chun Hong Yoon, Iris D. Young
Publikováno v:
Frontiers in High Performance Computing, Vol 2 (2024)
ExaFEL is an HPC-capable X-ray Free Electron Laser (XFEL) data analysis software suite for both Serial Femtosecond Crystallography (SFX) and Single Particle Imaging (SPI) developed in collaboration with the Linac Coherent Lightsource (LCLS), Lawrence
Externí odkaz:
https://doaj.org/article/83b95d45fe1d485199e57788656f6913
Autor:
Izumi Ishigami, Raymond G. Sierra, Zhen Su, Ariana Peck, Cong Wang, Frederic Poitevin, Stella Lisova, Brandon Hayes, Frank R. Moss, Sébastien Boutet, Robert E. Sublett, Chun Hong Yoon, Syun-Ru Yeh, Denis L. Rousseau
Publikováno v:
Nature Communications, Vol 14, Iss 1, Pp 1-10 (2023)
Abstract Cytochrome c oxidase (CcO) is an essential enzyme in mitochondrial and bacterial respiration. It catalyzes the four-electron reduction of molecular oxygen to water and harnesses the chemical energy to translocate four protons across biologic
Externí odkaz:
https://doaj.org/article/4cf0387559044a58973e6bfc59f08ca6
Publikováno v:
IUCrJ, Vol 10, Iss 5, Pp 568-578 (2023)
With X-ray free-electron lasers (XFELs), it is possible to determine the three-dimensional structure of noncrystalline nanoscale particles using X-ray single-particle imaging (SPI) techniques at room temperature. Classifying SPI scattering patterns,
Externí odkaz:
https://doaj.org/article/d6993323aad646eeab9f1e6a0b0f1835
Autor:
Esra Ayan, Busra Yuksel, Ebru Destan, Fatma Betul Ertem, Gunseli Yildirim, Meryem Eren, Oleksandr M. Yefanov, Anton Barty, Alexandra Tolstikova, Gihan K. Ketawala, Sabine Botha, E. Han Dao, Brandon Hayes, Mengning Liang, Matthew H. Seaberg, Mark S. Hunter, Alexander Batyuk, Valerio Mariani, Zhen Su, Frederic Poitevin, Chun Hong Yoon, Christopher Kupitz, Aina Cohen, Tzanko Doukov, Raymond G. Sierra, Çağdaş Dağ, Hasan DeMirci
Publikováno v:
Communications Biology, Vol 5, Iss 1, Pp 1-13 (2022)
Ayan et al. report two structures of the protein streptavidin - one at ambient temperature determined using serial femtosecond crystallography and a second one determined at cryogenic temperature. These results provide insights into the structural dy
Externí odkaz:
https://doaj.org/article/ce08830956e641dd939e81eeed58b63b
Autor:
Halilibrahim Ciftci, Hiroshi Tateishi, Kotaro Koiwai, Ryoko Koga, Kensaku Anraku, Kazuaki Monde, Çağdaş Dağ, Ebru Destan, Busra Yuksel, Esra Ayan, Gunseli Yildirim, Merve Yigin, F. Betul Ertem, Alaleh Shafiei, Omur Guven, Sabri O. Besler, Raymond G. Sierra, Chun Hong Yoon, Zhen Su, Mengling Liang, Burcin Acar, Turkan Haliloglu, Masami Otsuka, Fumiaki Yumoto, Mikako Fujita, Toshiya Senda, Hasan DeMirci
Publikováno v:
Scientific Reports, Vol 11, Iss 1, Pp 1-14 (2021)
Abstract Oligomerization of Pr55Gag is a critical step of the late stage of the HIV life cycle. It has been known that the binding of IP6, an abundant endogenous cyclitol molecule at the MA domain, has been linked to the oligomerization of Pr55Gag. H
Externí odkaz:
https://doaj.org/article/77d919cd60ce407e9fad3b1b4378ff45
Autor:
Sathya R. Chitturi, Nicolas G. Burdet, Youssef Nashed, Daniel Ratner, Aashwin Mishra, T. J. Lane, Matthew Seaberg, Vincent Esposito, Chun Hong Yoon, Mike Dunne, Joshua J. Turner
Publikováno v:
Structural Dynamics, Vol 9, Iss 5, Pp 054302-054302-14 (2022)
X-ray free electron laser experiments have brought unique capabilities and opened new directions in research, such as creating new states of matter or directly measuring atomic motion. One such area is the ability to use finely spaced sets of coheren
Externí odkaz:
https://doaj.org/article/41bc58124b1d48d8a8f90cfc53d183a9
Autor:
Max T. B. Clabbers, Susannah Holmes, Timothy W. Muusse, Parimala R. Vajjhala, Sara J. Thygesen, Alpeshkumar K. Malde, Dominic J. B. Hunter, Tristan I. Croll, Leonie Flueckiger, Jeffrey D. Nanson, Md. Habibur Rahaman, Andrew Aquila, Mark S. Hunter, Mengning Liang, Chun Hong Yoon, Jingjing Zhao, Nadia A. Zatsepin, Brian Abbey, Emma Sierecki, Yann Gambin, Katryn J. Stacey, Connie Darmanin, Bostjan Kobe, Hongyi Xu, Thomas Ve
Publikováno v:
Nature Communications, Vol 12, Iss 1, Pp 1-14 (2021)
MAL and MyD88 are downstream adaptors of Toll-like receptors (TLR) and the MAL TIR domain forms filaments in vitro, which in turn nucleate the assembly of crystalline arrays of the MyD88 TIR domain. Here, the authors present the structure of these My
Externí odkaz:
https://doaj.org/article/5393cc79aa8d46d7b03a93a616d4e3b9
Autor:
Dameli Assalauova, Young Yong Kim, Sergey Bobkov, Ruslan Khubbutdinov, Max Rose, Roberto Alvarez, Jakob Andreasson, Eugeniu Balaur, Alice Contreras, Hasan DeMirci, Luca Gelisio, Janos Hajdu, Mark S. Hunter, Ruslan P. Kurta, Haoyuan Li, Matthew McFadden, Reza Nazari, Peter Schwander, Anton Teslyuk, Peter Walter, P. Lourdu Xavier, Chun Hong Yoon, Sahba Zaare, Viacheslav A. Ilyin, Richard A. Kirian, Brenda G. Hogue, Andrew Aquila, Ivan A. Vartanyants
Publikováno v:
IUCrJ, Vol 7, Iss 6, Pp 1102-1113 (2020)
An improved analysis for single-particle imaging (SPI) experiments, using the limited data, is presented here. Results are based on a study of bacteriophage PR772 performed at the Atomic, Molecular and Optical Science instrument at the Linac Coherent
Externí odkaz:
https://doaj.org/article/5625da8d08d44edbb4f98276f17f6ada
Autor:
Fatma Betul Ertem, Omur Guven, Cengizhan Buyukdag, Oktay Gocenler, Esra Ayan, Busra Yuksel, Mehmet Gul, Gozde Usta, Barıs Cakılkaya, J. Austin Johnson, E. Han Dao, Zhen Su, Frederic Poitevin, Chun Hong Yoon, Christopher Kupitz, Brandon Hayes, Mengning Liang, Mark S. Hunter, Alexander Batyuk, Raymond G. Sierra, Gihan Ketawala, Sabine Botha, Çağdaş Dağ, Hasan DeMirci
Publikováno v:
STAR Protocols, Vol 3, Iss 1, Pp 101158- (2022)
Summary: The SARS-CoV-2 main protease of (Mpro) is an important target for SARS-CoV-2 related drug repurposing and development studies. Here, we describe the steps for structural characterization of SARS-CoV-2 Mpro, starting from plasmid preparation
Externí odkaz:
https://doaj.org/article/57d9c8025fa44a7b88ba24db6f0d7586
Autor:
Zhantao Chen, Cheng Peng, Alexander N Petsch, Sathya R Chitturi, Alana Okullo, Sugata Chowdhury, Chun Hong Yoon, Joshua J Turner
Publikováno v:
Machine Learning: Science and Technology, Vol 4, Iss 4, p 045056 (2023)
Advanced experimental measurements are crucial for driving theoretical developments and unveiling novel phenomena in condensed matter and materials physics, which often suffer from the scarcity of large-scale facility resources, such as x-ray or neut
Externí odkaz:
https://doaj.org/article/f3310b8ae0934ebcb8eb11703d408d7b