HaloClass: Salt-Tolerant Protein Classification with Protein Language Models.

Autor: Narang K; College of Biological Sciences, University of California, Davis, USA. knarang@ucdavis.edu., Nath A; Department of Biochemistry, Pt. Jawahar Lal Nehru Memorial Medical College, Raipur, India., Hemstrom W; Department of Biological Sciences, Purdue University, West Lafayette, USA., Chu SKS; Biophysics Graduate Program, University of California, Davis, USA.

Publikováno v: The protein journal [Protein J] 2024 Dec; Vol. 43 (6), pp. 1035-1044. Date of Electronic Publication: 2024 Oct 21.

Structural plasticity enables evolution and innovation of RuBisCO assemblies.

Autor: Liu AK; Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, CA 94720, USA.; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.; Biochemistry, Molecular, Cellular and Developmental Biology Graduate Group, University of California, Davis, Davis, CA 95616, USA., Pereira JH; Technology Division, Joint BioEnergy Institute, Emeryville, CA 94608, USA.; Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA., Kehl AJ; Biophysics Graduate Group, University of California, Davis, Davis, CA, USA., Rosenberg DJ; Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.; Graduate Group in Biophysics, University of California, Berkeley, Berkeley, CA 94720, USA., Orr DJ; Lancaster Environment Centre, Lancaster University, Lancaster LA1 4YQ, UK., Chu SKS; Biophysics Graduate Group, University of California, Davis, Davis, CA, USA., Banda DM; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA., Hammel M; Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA., Adams PD; Technology Division, Joint BioEnergy Institute, Emeryville, CA 94608, USA.; Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.; Department of Bioengineering, University of California, Berkeley, Berkeley, CA 94720, USA., Siegel JB; Genome Center, University of California, Davis, Davis, CA 95616, USA.; Chemistry Department, University of California, Davis, Davis, CA 95616, USA.; Department of Biochemistry and Molecular Medicine, University of California, Sacramento, Sacramento, CA 95616, USA., Shih PM; Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, CA 94720, USA.; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.; Feedstocks Division, Joint BioEnergy Institute, Emeryville, CA 94608, USA.; Innovative Genomics Institute, University of California, Berkeley, Berkeley, CA 94720, USA.

Publikováno v: Science advances [Sci Adv] 2022 Aug 26; Vol. 8 (34), pp. eadc9440. Date of Electronic Publication: 2022 Aug 26.