Zobrazeno 1 - 10
of 96
pro vyhledávání: '"Christine Gaspin"'
Autor:
Florian Besnard, Ana Guintard, Cécile Grohs, Laurence Guzylack-Piriou, Margarita Cano, Clémentine Escouflaire, Chris Hozé, Hélène Leclerc, Thierry Buronfosse, Lucie Dutheil, Jeanlin Jourdain, Anne Barbat, Sébastien Fritz, Marie-Christine Deloche, Aude Remot, Blandine Gaussères, Adèle Clément, Marion Bouchier, Elise Contat, Anne Relun, Vincent Plassard, Julie Rivière, Christine Péchoux, Marthe Vilotte, Camille Eche, Claire Kuchly, Mathieu Charles, Arnaud Boulling, Guillaume Viard, Stéphanie Minéry, Sarah Barbey, Clément Birbes, Coralie Danchin-Burge, Frédéric Launay, Sophie Mattalia, Aurélie Allais-Bonnet, Bérangère Ravary, Yves Millemann, Raphaël Guatteo, Christophe Klopp, Christine Gaspin, Carole Iampietro, Cécile Donnadieu, Denis Milan, Marie-Anne Arcangioli, Mekki Boussaha, Gilles Foucras, Didier Boichard, Aurélien Capitan
Publikováno v:
Genome Biology, Vol 25, Iss 1, Pp 1-30 (2024)
Abstract Background Dairy cattle breeds are populations of limited effective size, subject to recurrent outbreaks of recessive defects that are commonly studied using positional cloning. However, this strategy, based on the observation of animals wit
Externí odkaz:
https://doaj.org/article/c9ab6389eccd4e278eb6ccb394cbc8f9
Autor:
Élise Maigné, Céline Noirot, Julien Henry, Yaa Adu Kesewaah, Ludovic Badin, Sébastien Déjean, Camille Guilmineau, Arielle Krebs, Fanny Mathevet, Audrey Segalini, Laurent Thomassin, David Colongo, Christine Gaspin, Laurence Liaubet, Nathalie Vialaneix
Publikováno v:
BMC Bioinformatics, Vol 24, Iss 1, Pp 1-13 (2023)
Abstract Background The rapid development of omics acquisition techniques has induced the production of a large volume of heterogeneous and multi-level omics datasets, which require specific and sometimes complex analyses to obtain relevant biologica
Externí odkaz:
https://doaj.org/article/a552e556227e4640888f4d0664ad534c
Autor:
Camille Eché, Carole Iampietro, Clément Birbes, Andreea Dréau, Claire Kuchly, Arnaud Di Franco, Christophe Klopp, Thomas Faraut, Sarah Djebali, Adrien Castinel, Matthias Zytnicki, Erwan Denis, Mekki Boussaha, Cécile Grohs, Didier Boichard, Christine Gaspin, Denis Milan, Cécile Donnadieu
Publikováno v:
Scientific Data, Vol 10, Iss 1, Pp 1-12 (2023)
Abstract Inspired by the production of reference data sets in the Genome in a Bottle project, we sequenced one Charolais heifer with different technologies: Illumina paired-end, Oxford Nanopore, Pacific Biosciences (HiFi and CLR), 10X Genomics linked
Externí odkaz:
https://doaj.org/article/7cb91973e3214c2d95ce109fe9d9771d
Autor:
Matthias Zytnicki, Christine Gaspin
Publikováno v:
BMC Bioinformatics, Vol 23, Iss 1, Pp 1-19 (2022)
Abstract Background Sequencing is the key method to study the impact of short RNAs, which include micro RNAs, tRNA-derived RNAs, and piwi-interacting RNA, among others. The first step to make use of these reads is to map them to a genome. Existing ma
Externí odkaz:
https://doaj.org/article/bc3b9a53ce3d44edb5bb174406aba173
Autor:
Steffen Fuchs, Loélia Babin, Elissa Andraos, Chloé Bessiere, Semjon Willier, Johannes H Schulte, Christine Gaspin, Fabienne Meggetto
Publikováno v:
PLoS ONE, Vol 17, Iss 9, p e0273253 (2022)
Circular RNA (circRNA) is a noncoding RNA class with important implications for gene expression regulation, mostly by interaction with other RNA species or RNA-binding proteins. While the commonly applied short-read Illumina RNA-sequencing techniques
Externí odkaz:
https://doaj.org/article/c43aca92b6ba4a2e9e96f0ac8785d8cb
Autor:
Matthias Zytnicki, Christine Gaspin
Publikováno v:
PLoS ONE, Vol 15, Iss 5, p e0231738 (2020)
High-throughput sequencing makes it possible to provide the genome-wide distribution of small non coding RNAs in a single experiment, and contributed greatly to the identification and understanding of these RNAs in the last decade. Small non coding R
Externí odkaz:
https://doaj.org/article/3e60795e64d24f57bcb63865188f6d3e
Autor:
Thomas Ipoutcha, Iason Tsarmpopoulos, Vincent Talenton, Christine Gaspin, Annick Moisan, Caray A. Walker, Joe Brownlie, Alain Blanchard, Patricia Thebault, Pascal Sirand-Pugnet
Publikováno v:
Frontiers in Microbiology, Vol 10 (2019)
CRISPR/Cas systems provide adaptive defense mechanisms against invading nucleic acids in prokaryotes. Because of its interest as a genetic tool, the Type II CRISPR/Cas9 system from Streptococcus pyogenes has been extensively studied. It includes the
Externí odkaz:
https://doaj.org/article/04b57798ed2645c4a71615c3fc3cb6cb
Autor:
Franck Cerutti, Ludovic Mallet, Anaïs Painset, Claire Hoede, Annick Moisan, Christophe Bécavin, Mélodie Duval, Olivier Dussurget, Pascale Cossart, Christine Gaspin, Hélène Chiapello
Publikováno v:
BMC Genomics, Vol 18, Iss 1, Pp 1-15 (2017)
Abstract Background Small regulatory RNAs (sRNAs) are widely found in bacteria and play key roles in many important physiological and adaptation processes. Studying their evolution and screening for events of coevolution with other genomic features i
Externí odkaz:
https://doaj.org/article/3e3bfa581ea34698917526f202473d68
Autor:
Christophe Bécavin, Mikael Koutero, Nicolas Tchitchek, Franck Cerutti, Pierre Lechat, Nicolas Maillet, Claire Hoede, Hélène Chiapello, Christine Gaspin, Pascale Cossart
Publikováno v:
mSystems, Vol 2, Iss 2 (2017)
ABSTRACT As for many model organisms, the amount of Listeria omics data produced has recently increased exponentially. There are now >80 published complete Listeria genomes, around 350 different transcriptomic data sets, and 25 proteomic data sets av
Externí odkaz:
https://doaj.org/article/34bcd316cf9142148bec16d4f7545e1a
Autor:
Abdel Belkorchia, Cyrielle Gasc, Valérie Polonais, Nicolas Parisot, Nicolas Gallois, Céline Ribière, Emmanuelle Lerat, Christine Gaspin, Jean-François Pombert, Pierre Peyret, Eric Peyretaillade
Publikováno v:
PLoS ONE, Vol 10, Iss 9, p e0139075 (2015)
The proper prediction of the gene catalogue of an organism is essential to obtain a representative snapshot of its overall lifestyle, especially when it is not amenable to culturing. Microsporidia are obligate intracellular, sometimes hard to culture
Externí odkaz:
https://doaj.org/article/dcb5adbf74f94b159f3cc4a7f3e32497