Zobrazeno 1 - 10
of 29
pro vyhledávání: '"Christina J Castro"'
Autor:
Leanna Sayyad, Chelsea Harrington, Christina J Castro, Hanen Belgasmi-Allen, Stacey Jeffries Miles, Jamaica Hill, María Linda Mendoza Prillwitz, Lorena Gobern, Ericka Gaitán, Andrea Paola Delgado, Leticia Castillo Signor, Marc Rondy, Gloria Rey-Benito, Nancy Gerloff
Publikováno v:
PLoS ONE, Vol 19, Iss 7, p e0305108 (2024)
The Global Specialized Polio Laboratory at CDC supports the Global Poliovirus Laboratory Network with environmental surveillance (ES) to detect the presence of vaccine strain polioviruses, vaccine-derived polioviruses, and wild polioviruses in high-r
Externí odkaz:
https://doaj.org/article/ac8612a23fd74102b7359110710d897f
Autor:
Darlene D. Wagner, Rachel L. Marine, Edward Ramos, Terry Fei Fan Ng, Christina J. Castro, Margaret Okomo-Adhiambo, Krysten Harvey, Gregory Doho, Reagan Kelly, Yatish Jain, Roman L. Tatusov, Hideky Silva, Paul A. Rota, Agha N. Khan, M. Steven Oberste
Publikováno v:
Microbiology Spectrum, Vol 10, Iss 2 (2022)
ABSTRACT Next-generation sequencing (NGS) is a powerful tool for detecting and investigating viral pathogens; however, analysis and management of the enormous amounts of data generated from these technologies remains a challenge. Here, we present VPi
Externí odkaz:
https://doaj.org/article/95bb69524aa844d5b6c039187d5fd75a
Publikováno v:
BMC Genomics, Vol 21, Iss 1, Pp 1-12 (2020)
Abstract Background Viruses have high mutation rates and generally exist as a mixture of variants in biological samples. Next-generation sequencing (NGS) approaches have surpassed Sanger for generating long viral sequences, yet how variants affect NG
Externí odkaz:
https://doaj.org/article/00ee3c67c959490fa1e2fc7b8703a6b7
Autor:
Rachel L. Marine, Nana Afia Asante Ntim, Christina J. Castro, Keren O. Attiku, Deborah Pratt, Ewurabena Duker, Esinam Agbosu, Terry Fei Fan Ng, Wangeci Gatei, Evangeline Obodai, John Kofi Odoom, Chastity L. Walker, Paul A. Rota, M. Steven Oberste, William Kwabena Ampofo, S. Arunmozhi Balajee
Publikováno v:
International Journal of Infectious Diseases, Vol 81, Iss , Pp 231-234 (2019)
Objective: To demonstrate the feasibility of applying next-generation sequencing (NGS) in medium-resource reference laboratories in Africa to enhance global disease surveillance. Methods: A training program was developed to support implementation of
Externí odkaz:
https://doaj.org/article/d2335ab2d4534deeb70217f664dc6335
Autor:
Javier Martin, Cara C. Burns, Jaume Jorba, Lester M. Shulman, Andrew Macadam, Dimitra Klapsa, Manasi Majumdar, James Bullows, Ann Frolov, Ryan Mate, Erika Bujaki, Christina J. Castro, Kelley Bullard, John Konz, Kaija Hawes, Jillian Gauld, Isobel M. Blake, Laina D. Mercer, Feyrouz Kurji, Arie Voorman, Ousmane M. Diop, M. Steven Oberste, John Modlin, Grace Macklin, Martin Eisenhawer, Ananda S. Bandyopadhyay, Simona Zipursky
Publikováno v:
MMWR. Morbidity and Mortality Weekly Report. 71:786-790
The emergence and international spread of neurovirulent circulating vaccine-derived polioviruses (cVDPVs) across multiple countries in Africa and Asia in recent years pose a major challenge to the goal of eradicating all forms of polioviruses. Approx
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::67b32c7819eb0d8b34c45229a43002f9
https://doi.org/10.15585/mmwr.mm7124a2
https://doi.org/10.15585/mmwr.mm7124a2
Autor:
Kun Zhao, Alexander Schmidt, Kevin Tang, Christina J. Castro, Hongmei Liu, Hong Pang, Qi Chen, Marycelin Baba, Oderinde Bamidele Soji, David Bukbuk, Monilade Akinola, Johnson Adekunle Adeniji, Rachel L. Marine, Terry Fei Fan Ng, Jaume Jorba, Cara C. Burns
Publikováno v:
Microbiology Resource Announcements. 12
We sequenced 109 type 2 Sabin-like poliovirus isolates that had been collected from acute flaccid paralysis patients or healthy children in Nigeria. Understanding the genetic makeup of these viruses may contribute to polio eradication efforts.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::16845209870a099544b29a435bcd820f
https://doi.org/10.1128/mra.00735-22
https://doi.org/10.1128/mra.00735-22
Publikováno v:
BMC Genomics, Vol 21, Iss 1, Pp 1-12 (2020)
BMC Genomics
BMC Genomics
Background Viruses have high mutation rates and generally exist as a mixture of variants in biological samples. Next-generation sequencing (NGS) approaches have surpassed Sanger for generating long viral sequences, yet how variants affect NGS de novo
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::eec81aedd35eeb3d72fe8a2bf906cdc9
http://link.springer.com/article/10.1186/s12864-020-06801-w
http://link.springer.com/article/10.1186/s12864-020-06801-w
Publikováno v:
Microbiology Resource Announcements
We report the whole-genome sequences of new enterovirus D94 and D111 strains, isolated from a culture from stool specimens collected from acute flaccid paralysis (AFP) cases for poliovirus surveillance in Angola during 2010.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a7be8e423722a3a93c65fb4d19e9d58d
https://doi.org/10.1128/mra.00728-21
https://doi.org/10.1128/mra.00728-21
Autor:
Terry Fei Fan Ng, Christina J. Castro
Publikováno v:
Journal of Computational Biology. 24:1071-1080
Advances in next-generation sequencing technologies enable routine genome sequencing, generating millions of short reads. A crucial step for full genome analysis is the de novo assembly, and currently, performance of different assembly methods is mea
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::aee4398c80a103730bf73857d08507d3
https://doi.org/10.1089/cmb.2017.0013
https://doi.org/10.1089/cmb.2017.0013
Autor:
Preeti Chhabra, Jennifer L. Cannon, Mary E Wikswo, Christina J. Castro, Nikail Collins, Nicole Gregoricus, Leslie Barclay, Jan Vinjé, Rachel L. Marine, Laura Cristal Magaña
Publikováno v:
Journal of Clinical Microbiology. 55:2208-2221
Noroviruses are the most frequent cause of epidemic acute gastroenteritis in the United States. Between September 2013 and August 2016, 2,715 genotyped norovirus outbreaks were submitted to CaliciNet. GII.4 Sydney viruses caused 58% of the outbreaks
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e525e344625e08e8df36cc9a8f93eaa5
https://doi.org/10.1128/jcm.00455-17
https://doi.org/10.1128/jcm.00455-17