Chromosome-scale assembly and annotation of the perennial ryegrass genome

Autor: Istvan Nagy, Elisabeth Veeckman, Chang Liu, Michiel Van Bel, Klaas Vandepoele, Christian Sig Jensen, Tom Ruttink, Torben Asp

Publikováno v: BMC Genomics, Vol 23, Iss 1, Pp 1-20 (2022)

Abstract Background The availability of chromosome-scale genome assemblies is fundamentally important to advance genetics and breeding in crops, as well as for evolutionary and comparative genomics. The improvement of long-read sequencing technologie

Externí odkaz: https://doaj.org/article/867d1e6eb7c54397a4cbb81863ce1a99

Leveraging spatiotemporal genomic breeding value estimates of dry matter yield and herbage quality in ryegrass via random regression models

Autor: Elesandro Bornhofen, Dario Fè, Ingo Lenk, Morten Greve, Thomas Didion, Christian Sig Jensen, Torben Asp, Luc Janss

Publikováno v: The Plant Genome, Vol 15, Iss 4, Pp n/a-n/a (2022)

Abstract Joint modeling of correlated multienvironment and multiharvest data of perennial crop species may offer advantages in prediction schemes and a better understanding of the underlying dynamics in space and time. The goal of the present study w

Externí odkaz: https://doaj.org/article/de3efab5c2b54b2cb0e8bedecdd55325

Large Scale Screening of Epichloë Endophytes Infecting Schedonorus pratensis and Other Forage Grasses Reveals a Relation Between Microsatellite-Based Haplotypes and Loline Alkaloid Levels

Autor: Giovanni Cagnano, Niels Roulund, Christian Sig Jensen, Flavia Pilar Forte, Torben Asp, Adrian Leuchtmann

Publikováno v: Frontiers in Plant Science, Vol 10 (2019)

Species belonging to the Festuca-Lolium complex are often naturally infected with endophytic fungi of genus Epichloë. Recent studies on endophytes have shown the beneficial roles of host-endophyte associations as protection against insect herbivores

Externí odkaz: https://doaj.org/article/90c3844af51a4a20b47e7288d3e31c38

Targeted mutagenesis in ryegrass ( Lolium spp.) using the CRISPR/Cas9 system

Autor: Yunwei Zhang, Yidong Ran, Ingo Lenk, Christian Sig Jensen, Jin-Long Qiu, Istvan Nagy, Caixia Gao, Torben Asp

Publikováno v: Zhang, Y, Ran, Y, Nagy, I, Lenk, I, Qiu, J L, Asp, T, Jensen, C S & Gao, C 2020, ' Targeted mutagenesis in ryegrass ( Lolium spp.) using the CRISPR/Cas9 system ', Plant Biotechnology Journal, vol. 18, no. 9, pp. 1854-1856 . https://doi.org/10.1111/pbi.13359
Plant Biotechnology Journal

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a88f8e96a95f3017a0e62b392bb69136
https://doi.org/10.1111/pbi.13359

The cytosine methylation landscape of spring barley revealed by a new reduced representation bisulfite sequencing pipeline, WellMeth

Autor: Christian Sig Jensen, Kristian Thorup-Kristensen, J. D. Jensen, Torben Asp, Cornelis A. M. Wagemaker, Marta Malinowska, Istvan Nagy, Lene Krusell, Birger Eriksen, Lars Bonde Eriksen, Simon F. Svane, Ahmed Jahoor, Anja K Ruud

Publikováno v: The Plant Genome, 13, 3, pp. 1-18
The Plant Genome, 13, 1-18
Malinowska, M, Nagy, I, Wagemaker, C A M, Ruud, A K, Svane, S F, Thorup-Kristensen, K, Jensen, C S, Eriksen, B, Krusell, L, Jahoor, A, Jensen, J, Eriksen, L B & Asp, T 2020, ' The cytosine methylation landscape of spring barley revealed by a new reduced representation bisulfite sequencing pipeline, WellMeth ', The Plant Genome, vol. 13, no. 3, pp. e20049 . https://doi.org/10.1002/tpg2.20049
Malinowska, M, Nagy, I, Wagemaker, C A M, Ruud, A K, Svane, S F, Thorup-Kristensen, K, Jensen, C S, Eriksen, B, Krusell, L, Jahoor, A, Jensen, J, Eriksen, L B & Asp, T 2020, ' The cytosine methylation landscape of spring barley revealed by a new reduced representation bisulfite sequencing pipeline, WellMeth ', The Plant Genome, vol. 13, no. 3, 20049 . https://doi.org/10.1002/tpg2.20049
The Plant Genome, Vol 13, Iss 3, Pp n/a-n/a (2020)

Patterns and level of cytosine methylation vary widely among plant species and are associated with genome size as well as the proportion of transposons and other repetitive elements in the genome. We explored epigenetic patterns and diversity in a re

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::37020865759e8d79b5fca6c5701cca1d