transPLANT Resources for Triticeae Genomic Data

Autor: Manuel Spannagl, Michael Alaux, Matthias Lange, Daniel M. Bolser, Kai C. Bader, Thomas Letellier, Erik Kimmel, Raphael Flores, Cyril Pommier, Arnaud Kerhornou, Brandon Walts, Thomas Nussbaumer, Christoph Grabmuller, Jinbo Chen, Christian Colmsee, Sebastian Beier, Martin Mascher, Thomas Schmutzer, Daniel Arend, Anil Thanki, Ricardo Ramirez-Gonzalez, Martin Ayling, Sarah Ayling, Mario Caccamo, Klaus F.X. Mayer, Uwe Scholz, Delphine Steinbach, Hadi Quesneville, Paul J. Kersey

Publikováno v: The Plant Genome, Vol 9, Iss 1 (2016)

The genome sequences of many important Triticeae species, including bread wheat ( L.) and barley ( L.), remained uncharacterized for a long time because their high repeat content, large sizes, and polyploidy. As a result of improvements in sequencing

Externí odkaz: https://doaj.org/article/ec471f2fcdcc4fe295be88081e7065b6

A chromosome conformation capture ordered sequence of the barley genome

Autor: Andreas Houben, Luke Ramsay, Fei Dai, Paul J. Kersey, Xiao-Qi Zhang, Guoping Zhang, Stefano Grasso, Hua Li, Klaus F. X. Mayer, Joanne Russell, Alan H. Schulman, John K. McCooke, Pete E. Hedley, Xuan Li, Timothy J. Close, Sarah Ayling, Roberto A. Barrero, Nils Stein, Saki Chan, Cong Tan, Robbie Waugh, Thomas Schmutzer, Heidrun Gundlach, Micha Bayer, Sebastian Beier, Volodymyr Radchuk, Marius Felder, Steve Wanamaker, Axel Himmelbach, Jaakko Tanskanen, Lala Aliyeva-Schnorr, Martin Mascher, Rachid Ounit, Jaroslav Doležel, Mario Caccamo, Yong Han, Dan Bolser, Uwe Scholz, Brett Chapman, Sujie Cao, Leah Clissold, Manuel Spannagl, Marco Groth, María Muñoz-Amatriaín, Shuya Yin, Helena Staňková, Qisen Zhang, Hana Šimková, Christian Colmsee, Chongyun Lin, Christoph Dockter, Dharanya Sampath, Georg Haberer, Gaofeng Zhou, Matthew I. Bellgard, Lin Li, Stefan Taudien, Stefano Lonardi, Hui Liu, Ljudmilla Borisjuk, Thomas Wicker, Gary J. Muehlbauer, Matthias Platzer, Jesse Poland, Ilka Braumann, Jan Vrána, Darren Heavens, Matthew D. Clark, Sven Twardziok, Chengdao Li, Mats Hansson, Alex Hastie, Songbo Wang, Peter Langridge, Anna Chailyan, Penghao Wang

Publikováno v: Nature, vol 544, iss 7651
Nature, 544:427–433
Nature 544, 427-433 (2017)

Cereal grasses of the Triticeae tribe have been the major food source in temperate regions since the dawn of agriculture. Their large genomes are characterized by a high content of repetitive elements and large pericentromeric regions that are virtua

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ee6a076c3eab1cd8d5e7e9648c75cf6c
https://pubmed.ncbi.nlm.nih.gov/28447630

MetaCrop 2.0: managing and exploring information about crop plant metabolism

Autor: Stephan Weise, Astrid Junker, Björn H. Junker, Matthias Klapperstück, Tobias Czauderna, Anja Hartmann, Christian Colmsee, Uwe Scholz, Eva Grafahrend-Belau, Falk Schreiber

Publikováno v: Nucleic Acids Research

MetaCrop is a manually curated repository of high-quality data about plant metabolism, providing different levels of detail from overview maps of primary metabolism to kinetic data of enzymes. It contains information about seven major crop plants wit

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::89e729ba8e23a9a83371516ff3e55d8f
http://europepmc.org/articles/PMC3245004

Species-wide genome sequence and nucleotide polymorphisms from the model allopolyploid plant Brassica napus

Autor: Christian Colmsee, Stefan Abel, Amine Abbadi, Frank Breuer, Thomas Schmutzer, Gunhild Leckband, Chris Ulpinnis, Emmanuelle Dyrszka, Doreen Stengel, Rod J. Snowdon, Uwe Scholz, Birgit Samans, Peter Duchscherer, Stephan Weise, Denis Lespinasse, Zeljko Micic

Publikováno v: Scientific Data

Brassica napus (oilseed rape, canola) is one of the world’s most important sources of vegetable oil for human nutrition and biofuel, and also a model species for studies investigating the evolutionary consequences of polyploidisation. Strong bottle

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b682b996648f024725bd828e21afcdc9
https://doi.org/10.1038/sdata.2015.72

Data Management Experiences and Best Practices from the Perspective of a Plant Research Institute

Autor: Danuta Schüler, Markus Oppermann, Matthias Lange, Stephan Weise, Helmut Knüpffer, Uwe Scholz, Christian Colmsee, Daniel Arend

Publikováno v: Lecture Notes in Computer Science ISBN: 9783319085890
DILS

Research in life sciences faces increasing amounts of cross-domain data, also kown as “big data”. This has notable effects on IT-departments and the dry lab desk alike. In this paper, we report on experiences from a decade of data management in a

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::ea38c98e58e14119efd63ca6ce28c933
https://doi.org/10.1007/978-3-319-08590-6_4