The Human Pathogen Mycobacterium tuberculosis and the Fish Pathogen Mycobacterium marinum Trigger a Core Set of Late Innate Immune Response Genes in Zebrafish Larvae

Autor: Ron P. Dirks, Anita Ordas, Susanne Jong-Raadsen, Sebastiaan A. Brittijn, Mariëlle C. Haks, Christiaan V. Henkel, Katarina Oravcova, Peter I. Racz, Nynke Tuinhof-Koelma, Malgorzata I. Korzeniowska nee Wiweger, Stephen H. Gillespie, Annemarie H. Meijer, Tom H. M. Ottenhoff, Hans J. Jansen, Herman P. Spaink

Publikováno v: Biology, Vol 13, Iss 9, p 688 (2024)

Zebrafish is a natural host of various Mycobacterium species and a surrogate model organism for tuberculosis research. Mycobacterium marinum is evolutionarily one of the closest non-tuberculous species related to M. tuberculosis and shares the majori

Externí odkaz: https://doaj.org/article/012fc30884164128a2ce1e147383f949

3D Atlas of the Pituitary Gland of the Model Fish Medaka (Oryzias latipes)

Autor: Muhammad Rahmad Royan, Khadeeja Siddique, Gergely Csucs, Maja A. Puchades, Rasoul Nourizadeh-Lillabadi, Jan G. Bjaalie, Christiaan V. Henkel, Finn-Arne Weltzien, Romain Fontaine

Publikováno v: Frontiers in Endocrinology, Vol 12 (2021)

In vertebrates, the anterior pituitary plays a crucial role in regulating several essential physiological processes via the secretion of at least seven peptide hormones by different endocrine cell types. Comparative and comprehensive knowledge of the

Externí odkaz: https://doaj.org/article/93b4e2c8320b4a54b51677b9d1ec4479

De novo whole-genome assembly of a wild type yeast isolate using nanopore sequencing [version 2; referees: 1 approved, 3 approved with reservations]

Autor: Michael Liem, Hans J. Jansen, Ron P. Dirks, Christiaan V. Henkel, G. Paul H. van Heusden, Richard J.L.F. Lemmers, Trifa Omer, Shuai Shao, Peter J. Punt, Herman P. Spaink

Publikováno v: F1000Research, Vol 6 (2018)

Background: The introduction of the MinION sequencing device by Oxford Nanopore Technologies may greatly accelerate whole genome sequencing. Nanopore sequence data offers great potential for de novo assembly of complex genomes without using other tec

Externí odkaz: https://doaj.org/article/8adb17a59e7d401d82721c0180bdf4f0

Eye-transcriptome and genome-wide sequencing for Scolecophidia: implications for inferring the visual system fo the ancestral snake

Autor: Nicholas R. Casewell, Christiaan V. Henkel, Freek J. Vonk, Sonja Meimann, Kate L. Sanders, David J. Gower, James F. Fleming, Leo Peichl, Bruno F. Simões, Davide Pisani, Harald M. I. Kerkkamp, Michael K. Richardson

Publikováno v: Gower, D J, Fleming, J, Pisani, D, Vonk, F, Kerkkamp, H, Peichl, L, Neumann, S, Casewell, N, Henkel, C, Richardson, M, Sanders, K & Simões, B 2021, ' Eye-transcriptome and genome-wide sequencing for Scolecophidia: implications for inferring the visual system fo the ancestral snake ', Genome Biology and Evolution, vol. 13, no. 12, evab253 . https://doi.org/10.1093/gbe/evab253
Genome Biology and Evolution

Molecular genetic data have recently been incorporated in attempts to reconstruct the ecology of the ancestral snake, though this has been limited by a paucity of data for one of the two main extant snake taxa, the highly fossorial Scolecophidia. Her

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0f96a5b3467e154fbf800e24f68816a0
https://hdl.handle.net/1983/0d14758d-e236-4c5c-949a-e1d903e1c798

Microbial diversity characterization of seawater in a pilot study using Oxford Nanopore Technologies long-read sequencing

Autor: Michael Liem, Tonny J. G. Regensburg-Tuı̈nk, Herman P. Spaink, Hans J. Jansen, Christiaan V. Henkel

Publikováno v: BMC Research Notes
BMC Research Notes, Vol 14, Iss 1, Pp 1-7 (2021)

Objective Currently the majority of non-culturable microbes in sea water are yet to be discovered, Nanopore offers a solution to overcome the challenging tasks to identify the genomes and complex composition of oceanic microbiomes. In this study we e

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b4487b096d848fcf6f3bc5a95287215c
http://europepmc.org/articles/PMC7852107