Transmission dynamics of human herpesvirus 6A, 6B and 7 from whole genome sequences of families.

Autor: Chrisman, Brianna S.^1,2 (AUTHOR) briannac@stanford.edu, He, Chloe³ (AUTHOR), Jung, Jae-Yoon⁴ (AUTHOR), Stockham, Nate⁵ (AUTHOR), Paskov, Kelley³ (AUTHOR), Wall, Dennis P.⁴ (AUTHOR)

Publikováno v: Virology Journal. 12/24/2022, Vol. 19 Issue 1, p1-14. 14p.

Improved detection of disease-associated gut microbes using 16S sequence-based biomarkers.

Autor: Chrisman, Brianna S.¹ (AUTHOR) briannac@stanford.edu, Paskov, Kelley M.² (AUTHOR), Stockham, Nate³ (AUTHOR), Jung, Jae-Yoon² (AUTHOR), Varma, Maya⁴ (AUTHOR), Washington, Peter Y.¹ (AUTHOR), Tataru, Christine⁵ (AUTHOR), Iwai, Shoko⁶ (AUTHOR), DeSantis, Todd Z.⁶ (AUTHOR), David, Maude⁷ (AUTHOR), Wall, Dennis P.^2,8 (AUTHOR)

Publikováno v: BMC Bioinformatics. 10/19/2021, Vol. 22 Issue 1, p1-16. 16p.

Additional file 1 of A maximum flow-based network approach for identification of stable noncoding biomarkers associated with the multigenic neurological condition, autism

Autor: Varma, Maya, Paskov, Kelley M., Chrisman, Brianna S., Sun, Min Woo, Jae-Yoon Jung, Stockham, Nate T., Washington, Peter Y., Wall, Dennis P.

Additional file 1. SRS Variant Annotations. This extended table includes chromosomal coordinates and additional details for the 55 variants identified in this work.

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::96107d3b884d9b510a6761c9581d491a

Additional file 1 of Game theoretic centrality: a novel approach to prioritize disease candidate genes by combining biological networks with the Shapley value

Autor: Sun, Min Woo, Moretti, Stefano, Paskov, Kelley M., Stockham, Nate T., Varma, Maya, Chrisman, Brianna S., Washington, Peter Y., Jae-Yoon Jung, Wall, Dennis P.

Additional file 1 Full list of genes ranked by game theoretic centrality, degree centrality, betweenness centrality, and PageRank algorithm.

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::450be5557b81e84c0845b240f43deae0

Longitudinal study of stool-associated microbial taxa in sibling pairs with and without autism spectrum disorder.

Autor: Tataru C; Department of Microbiology, Oregon State University, Corvallis, OR, USA. tataruc@oregonstate.edu., Martin A; Department of Microbiology, Oregon State University, Corvallis, OR, USA., Dunlap K; Departments of Pediatrics (Systems Medicine), Biomedical Data Science, and Psychiatry and Behavioral Sciences, Stanford University, Stanford, CA, USA., Peras M; Second Genome Inc., Brisbane, CA, USA., Chrisman BS; Departments of Pediatrics (Systems Medicine), Biomedical Data Science, and Psychiatry and Behavioral Sciences, Stanford University, Stanford, CA, USA.; Department of Bioengineering, Stanford University, Stanford, CA, USA., Rutherford E; Second Genome Inc., Brisbane, CA, USA., Deitzler GE; Department of Microbiology, Oregon State University, Corvallis, OR, USA., Phillips A; Department of Microbiology, Oregon State University, Corvallis, OR, USA., Yin X; Second Genome Inc., Brisbane, CA, USA., Sabino K; Second Genome Inc., Brisbane, CA, USA., Hannibal RL; Second Genome Inc., Brisbane, CA, USA., Hartono W; Second Genome Inc., Brisbane, CA, USA., Lin M; Second Genome Inc., Brisbane, CA, USA., Raack E; Second Genome Inc., Brisbane, CA, USA., Wu Y; Second Genome Inc., Brisbane, CA, USA., DeSantis TZ; Second Genome Inc., Brisbane, CA, USA., Iwai S; Second Genome Inc., Brisbane, CA, USA., Wall DP; Departments of Pediatrics (Systems Medicine), Biomedical Data Science, and Psychiatry and Behavioral Sciences, Stanford University, Stanford, CA, USA.; Department of Biomedical Data Science, Stanford University, Stanford, CA, USA.; Department of Psychiatry and Behavioral Sciences, Stanford University, Stanford, CA, USA., David MM; Department of Microbiology, Oregon State University, Corvallis, OR, USA. maude.david@oregonstate.edu.; Department of Pharmaceutical Sciences, Oregon State University, Corvallis, OR, USA. maude.david@oregonstate.edu.

Publikováno v: ISME communications [ISME Commun] 2021 Dec 18; Vol. 1 (1), pp. 80. Date of Electronic Publication: 2021 Dec 18.