Zobrazeno 1 - 10
of 228
pro vyhledávání: '"Chris Maliepaard"'
Autor:
Alejandro Thérèse Navarro, Giorgio Tumino, Roeland E. Voorrips, Paul Arens, Marinus J. M. Smulders, Eric van de Weg, Chris Maliepaard
Publikováno v:
BMC Bioinformatics, Vol 23, Iss 1, Pp 1-16 (2022)
Abstract Quantitative trait locus (QTL) analysis allows to identify regions responsible for a trait and to associate alleles with their effect on phenotypes. When using biallelic markers to find these QTL regions, two alleles per QTL are modelled. Th
Externí odkaz:
https://doaj.org/article/b86e93c1479d41b69b2d35655df3ec9b
Autor:
Alejandro Thérèse Navarro, Peter M. Bourke, Eric van de Weg, Corentin R. Clot, Paul Arens, Richard Finkers, Chris Maliepaard
Publikováno v:
Frontiers in Genetics, Vol 14 (2023)
Linkage mapping is an approach to order markers based on recombination events. Mapping algorithms cannot easily handle genotyping errors, which are common in high-throughput genotyping data. To solve this issue, strategies have been developed, aimed
Externí odkaz:
https://doaj.org/article/f7765f362ea24a7ea087fbbe0fa81491
Autor:
Stefan Wilson, Marcos Malosetti, Chris Maliepaard, Han A. Mulder, Richard G. F. Visser, Fred van Eeuwijk
Publikováno v:
Frontiers in Plant Science, Vol 12 (2021)
Training set construction is an important prerequisite to Genomic Prediction (GP), and while this has been studied in diploids, polyploids have not received the same attention. Polyploidy is a common feature in many crop plants, like for example bana
Externí odkaz:
https://doaj.org/article/6ed54ce3c91b4c1cbec52c3206b058aa
Autor:
Stefan Wilson, Chaozhi Zheng, Chris Maliepaard, Han A. Mulder, Richard G. F. Visser, Ate van der Burgt, Fred van Eeuwijk
Publikováno v:
Frontiers in Plant Science, Vol 12 (2021)
Use of genomic prediction (GP) in tetraploid is becoming more common. Therefore, we think it is the right time for a comparison of GP models for tetraploid potato. GP models were compared that contrasted shrinkage with variable selection, parametric
Externí odkaz:
https://doaj.org/article/c9bf2f05178c4de3924d5ee02aa1b974
Autor:
Peter M. Bourke, Christine A. Hackett, Roeland E. Voorrips, Richard G. F. Visser, Chris Maliepaard
Publikováno v:
G3: Genes, Genomes, Genetics, Vol 9, Iss 7, Pp 2107-2122 (2019)
New genotyping technologies, offering the possibility of high genetic resolution at low cost, have helped fuel a surge in interest in the genetic analysis of polyploid species. Nevertheless, autopolyploid species present extra challenges not encounte
Externí odkaz:
https://doaj.org/article/2bcc2d881f3b411ca55109236188bf86
Autor:
Animesh Acharjee, Pierre-Yves Chibon, Bjorn Kloosterman, Twan America, Jenny Renaut, Chris Maliepaard, Richard G. F. Visser
Publikováno v:
BMC Plant Biology, Vol 18, Iss 1, Pp 1-10 (2018)
Abstract Background Recent advances in ~omics technologies such as transcriptomics, metabolomics and proteomics along with genotypic profiling have permitted the genetic dissection of complex traits such as quality traits in non-model species. To get
Externí odkaz:
https://doaj.org/article/9080e5e0daf544af813bd39519474151
Autor:
Ran Wang, Siyuan Xing, Peter M. Bourke, Xiuquan Qi, Miaomiao Lin, Danny Esselink, Paul Arens, Roeland E. Voorrips, Richard G.F. Visser, Leiming Sun, Yunpeng Zhong, Hong Gu, Yukuo Li, Sikai Li, Chris Maliepaard, Jinbao Fang
Publikováno v:
Plant Biotechnology Journal 21 (2023) 2
Plant Biotechnology Journal, 21(2), 369-380
Plant Biotechnology Journal, 21(2), 369-380
Kiwifruit (Actinidia spp) is a woody, perennial and deciduous vine. In this genus, there are multiple ploidy levels but the main cultivated cultivars are polyploid. Despite the availability of many genomic resources in kiwifruit, SNP genotyping is st
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3b92a9ff51be1b0b3a169e76be7187ea
https://doi.org/10.1111/pbi.13958
https://doi.org/10.1111/pbi.13958
Publikováno v:
Frontiers in Genetics, Vol 10 (2019)
DNA sequence reads contain information about the genomic variants located on a single chromosome. By extracting and extending this information using the overlaps between the reads, the haplotypes of an individual can be obtained. Using parent-offspri
Externí odkaz:
https://doaj.org/article/a6d79dd4d66647cf9245f3a328047e84
Genetic diversity is crucial for the success of plant breeding programs and core collections that capture this diversity are an important resource to exploit this. In this study, we present a method for constructing a core collection that integrates
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::df9b1b6b3dada0ed9c0a5df5467ab0df
https://doi.org/10.21203/rs.3.rs-2591434/v1
https://doi.org/10.21203/rs.3.rs-2591434/v1
Publikováno v:
Frontiers in Plant Science, Vol 9 (2018)
Polyploid organisms carry more than two copies of each chromosome, a condition rarely tolerated in animals but which occurs relatively frequently in the plant kingdom. One of the principal challenges faced by polyploid organisms is to evolve stable m
Externí odkaz:
https://doaj.org/article/6d074a3a49ca40d2abab272b4b09df23