Zobrazeno 1 - 10
of 135
pro vyhledávání: '"Chris, Daum"'
Autor:
Tiffany Oliver, Neha Varghese, Simon Roux, Frederik Schulz, Marcel Huntemann, Alicia Clum, Brian Foster, Bryce Foster, Robert Riley, Kurt LaButti, Robert Egan, Patrick Hajek, Supratim Mukherjee, Galina Ovchinnikova, T. B. K. Reddy, Sara Calhoun, Richard D. Hayes, Robin R. Rohwer, Zhichao Zhou, Chris Daum, Alex Copeland, I-Min A. Chen, Natalia N. Ivanova, Nikos C. Kyrpides, Nigel J. Mouncey, Tijana Glavina del Rio, Igor V. Grigoriev, Steven Hofmeyr, Leonid Oliker, Katherine Yelick, Karthik Anantharaman, Katherine D. McMahon, Tanja Woyke, Emiley A. Eloe-Fadrosh
Publikováno v:
Scientific Data, Vol 11, Iss 1, Pp 1-7 (2024)
Abstract The North Temperate Lakes Long-Term Ecological Research (NTL-LTER) program has been extensively used to improve understanding of how aquatic ecosystems respond to environmental stressors, climate fluctuations, and human activities. Here, we
Externí odkaz:
https://doaj.org/article/eedd08c620c9493ebd2d5a49aa266009
Autor:
Reid Longley, Aaron Robinson, Julian A. Liber, Abigail E. Bryson, Demosthenes P. Morales, Kurt LaButti, Robert Riley, Stephen J. Mondo, Alan Kuo, Yuko Yoshinaga, Chris Daum, Kerrie Barry, Igor V. Grigoriev, Alessandro Desirò, Patrick S. G. Chain, Gregory Bonito
Publikováno v:
Communications Biology, Vol 6, Iss 1, Pp 1-13 (2023)
Abstract Diverse members of early-diverging Mucoromycota, including mycorrhizal taxa and soil-associated Mortierellaceae, are known to harbor Mollicutes-related endobacteria (MRE). It has been hypothesized that MRE were acquired by a common ancestor
Externí odkaz:
https://doaj.org/article/26b03e3f6152426da85258781f32a199
Autor:
Anthony Duncan, Kerrie Barry, Chris Daum, Emiley Eloe-Fadrosh, Simon Roux, Katrin Schmidt, Susannah G. Tringe, Klaus U. Valentin, Neha Varghese, Asaf Salamov, Igor V. Grigoriev, Richard M. Leggett, Vincent Moulton, Thomas Mock
Publikováno v:
Data in Brief, Vol 47, Iss , Pp 108990- (2023)
This article presents metagenome-assembled genomes (MAGs) for both eukaryotic and prokaryotic organisms originating from the Arctic and Atlantic oceans, along with gene prediction and functional annotation for MAGs from both domains. Eleven samples f
Externí odkaz:
https://doaj.org/article/06f8e94497c7436ca01fb884a2f2e263
Autor:
Anthony Duncan, Kerrie Barry, Chris Daum, Emiley Eloe-Fadrosh, Simon Roux, Katrin Schmidt, Susannah G. Tringe, Klaus U. Valentin, Neha Varghese, Asaf Salamov, Igor V. Grigoriev, Richard M. Leggett, Vincent Moulton, Thomas Mock
Publikováno v:
Microbiome, Vol 10, Iss 1, Pp 1-21 (2022)
Abstract Background Phytoplankton communities significantly contribute to global biogeochemical cycles of elements and underpin marine food webs. Although their uncultured genomic diversity has been estimated by planetary-scale metagenome sequencing
Externí odkaz:
https://doaj.org/article/0069a965e3764c518b6126ee9e29cc5b
Autor:
Thomas Mock, William Boulton, John-Paul Balmonte, Kevin Barry, Stefan Bertilsson, Jeff Bowman, Moritz Buck, Gunnar Bratbak, Emelia J Chamberlain, Michael Cunliffe, Jessie Creamean, Oliver Ebenhöh, Sarah Lena Eggers, Allison A Fong, Jessie Gardner, Rolf Gradinger, Mats A Granskog, Charlotte Havermans, Thomas Hill, Clara J M Hoppe, Kerstin Korte, Aud Larsen, Oliver Müller, Anja Nicolaus, Ellen Oldenburg, Ovidiu Popa, Swantje Rogge, Hendrik Schäfer, Katyanne Shoemaker, Pauline Snoeijs-Leijonmalm, Anders Torstensson, Klaus Valentin, Anna Vader, Kerrie Barry, I-M A Chen, Alicia Clum, Alex Copeland, Chris Daum, Emiley Eloe-Fadrosh, Brian Foster, Bryce Foster, Igor V Grigoriev, Marcel Huntemann, Natalia Ivanova, Alan Kuo, Nikos C Kyrpides, Supratim Mukherjee, Krishnaveni Palaniappan, T B K Reddy, Asaf Salamov, Simon Roux, Neha Varghese, Tanja Woyke, Dongying Wu, Richard M Leggett, Vincent Moulton, Katja Metfies
Publikováno v:
PLoS Biology, Vol 20, Iss 10, p e3001835 (2022)
Multiomics approaches need to be applied in the central Arctic Ocean to benchmark biodiversity change and to identify novel species and their genes. As part of MOSAiC, EcoOmics will therefore be essential for conservation and sustainable bioprospecti
Externí odkaz:
https://doaj.org/article/6c164b82d62645998848d52205746fe5
Autor:
Ioana M. Marian, Peter Jan Vonk, Ivan D. Valdes, Kerrie Barry, Benedict Bostock, Akiko Carver, Chris Daum, Harry Lerner, Anna Lipzen, Hongjae Park, Margo B. P. Schuller, Martin Tegelaar, Andrew Tritt, Jeremy Schmutz, Jane Grimwood, Luis G. Lugones, In-Geol Choi, Han A. B. Wösten, Igor V. Grigoriev, Robin A. Ohm
Publikováno v:
mBio, Vol 13, Iss 3 (2022)
ABSTRACT Wood-decaying fungi of the class Agaricomycetes (phylum Basidiomycota) are saprotrophs that break down lignocellulose and play an important role in nutrient recycling. They secrete a wide range of extracellular plant cell wall degrading enzy
Externí odkaz:
https://doaj.org/article/5c815a92dcc148e5be274ca010406681
Autor:
Gina Chaput, Jacob Ford, Lani DeDiego, Achala Narayanan, Wing Yin Tam, Meghan Whalen, Marcel Huntemann, Alicia Clum, Alex Spunde, Manoj Pillay, Krishnaveni Palaniappan, Neha Varghese, Natalia Mikhailova, I-Min Chen, Dimitrios Stamatis, T. B. K Reddy, Ronan O’Malley, Chris Daum, Nicole Shapiro, Natalia Ivanova, Nikos C. Kyrpides, Tanja Woyke, Tijana Glavina del Rio, Kristen M. DeAngelis
Publikováno v:
Microbiology Spectrum, Vol 10, Iss 3 (2022)
ABSTRACT Novel bacterial isolates with the capabilities of lignin depolymerization, catabolism, or both, could be pertinent to lignocellulosic biofuel applications. In this study, we aimed to identify anaerobic bacteria that could address the economi
Externí odkaz:
https://doaj.org/article/0e0ea69887504ac0867efc6dd09ece02
Autor:
Salma Mukhtar, Ann M. Hirsch, Noor Khan, Kauser A. Malik, Ethan A. Humm, Matteo Pellegrini, Baochen Shi, Leah Briscoe, Marcel Huntemann, Alicia Clum, Brian Foster, Bryce Foster, Simon Roux, Krishnaveni Palaniappan, Neha Varghese, Supratim Mukherjee, T.B.K. Reddy, Chris Daum, Alex Copeland, Natalia N. Ivanova, Nikos C. Kyrpides, Nicole Shapiro, Emiley A. Eloe-Fadrosh, Maskit Maymon, Muhammad S. Mirza, Samina Mehnaz
Publikováno v:
Phytobiomes Journal, Vol 4, Iss 4, Pp 364-374 (2020)
Cowpea is one of the major legumes cultivated in arid and semiarid regions of the world. Four soil-microbial samples (SS-1 through SS-4) collected from semiarid soils in Punjab, Pakistan were planted with cowpea (Vigna unguiculata) crops, which were
Externí odkaz:
https://doaj.org/article/cc1e5d38a4654643a4fa30ea7e52e4ea
Autor:
Inge Kjærbølling, Tammi Vesth, Jens C. Frisvad, Jane L. Nybo, Sebastian Theobald, Sara Kildgaard, Thomas Isbrandt Petersen, Alan Kuo, Atsushi Sato, Ellen K. Lyhne, Martin E. Kogle, Ad Wiebenga, Roland S. Kun, Ronnie J. M. Lubbers, Miia R. Mäkelä, Kerrie Barry, Mansi Chovatia, Alicia Clum, Chris Daum, Sajeet Haridas, Guifen He, Kurt LaButti, Anna Lipzen, Stephen Mondo, Jasmyn Pangilinan, Robert Riley, Asaf Salamov, Blake A. Simmons, Jon K. Magnuson, Bernard Henrissat, Uffe H. Mortensen, Thomas O. Larsen, Ronald P. de Vries, Igor V. Grigoriev, Masayuki Machida, Scott E. Baker, Mikael R. Andersen
Publikováno v:
Nature Communications, Vol 11, Iss 1, Pp 1-12 (2020)
Aspergillus fungi classified within the section Flavi include harmful and beneficial species. Here, Kjærbølling et al. analyse the genomes of 23 Flavi species, showing high genetic diversity and potential for synthesis of over 13,700 CAZymes and 16
Externí odkaz:
https://doaj.org/article/bdaa7f283fe143698df14e2b5d6b20fc
Autor:
James B Thissen, Michael D Morrison, Nisha Mulakken, William C Nelson, Chris Daum, Sharon Messenger, Debra A Wadford, Crystal Jaing
Publikováno v:
PLoS ONE, Vol 17, Iss 12, p e0278543 (2022)
Co-infections or secondary infections with SARS-CoV-2 have the potential to affect disease severity and morbidity. Additionally, the potential influence of the nasal microbiome on COVID-19 illness is not well understood. In this study, we analyzed 20
Externí odkaz:
https://doaj.org/article/eae432f481cb4996a4a0b0caf77c4473