PathoLM: Identifying pathogenicity from the DNA sequence through the Genome Foundation Model

Autor: Dip, Sajib Acharjee, Shuvo, Uddip Acharjee, Chau, Tran, Song, Haoqiu, Choi, Petra, Wang, Xuan, Zhang, Liqing

Pathogen identification is pivotal in diagnosing, treating, and preventing diseases, crucial for controlling infections and safeguarding public health. Traditional alignment-based methods, though widely used, are computationally intense and reliant o

Externí odkaz: http://arxiv.org/abs/2406.13133

Highly Multiplexed Reverse-Transcription Loop-Mediated Isothermal Amplification and Nanopore Sequencing (LAMPore) for Wastewater-Based Surveillance.

Autor: Kang S; Department of Civil and Environmental Engineering, Virginia Tech, Blacksburg, Virginia 24061, United States.; Virginia Tech Institute of Critical Technology and Applied Science (ICTAS), Sustainable Nanotechnology Center (VTSuN), Blacksburg, Virginia 24061, United States., Choi P; Department of Civil and Environmental Engineering, Virginia Tech, Blacksburg, Virginia 24061, United States.; Virginia Tech Institute of Critical Technology and Applied Science (ICTAS), Sustainable Nanotechnology Center (VTSuN), Blacksburg, Virginia 24061, United States., Maile-Moskowitz A; Department of Civil and Environmental Engineering, Virginia Tech, Blacksburg, Virginia 24061, United States.; Virginia Tech Institute of Critical Technology and Applied Science (ICTAS), Sustainable Nanotechnology Center (VTSuN), Blacksburg, Virginia 24061, United States., Brown CL; Department of Genetics, Bioinformatics, and Computational Biology, Blacksburg, Virginia 24061, United States., Gonzalez RA; Hampton Roads Sanitation District, Virginia Beach ,Virginia23455, United States., Pruden A; Department of Civil and Environmental Engineering, Virginia Tech, Blacksburg, Virginia 24061, United States.; Virginia Tech Institute of Critical Technology and Applied Science (ICTAS), Sustainable Nanotechnology Center (VTSuN), Blacksburg, Virginia 24061, United States., Vikesland PJ; Department of Civil and Environmental Engineering, Virginia Tech, Blacksburg, Virginia 24061, United States.; Virginia Tech Institute of Critical Technology and Applied Science (ICTAS), Sustainable Nanotechnology Center (VTSuN), Blacksburg, Virginia 24061, United States.

Publikováno v: ACS ES&T water [ACS ES T Water] 2024 Feb 26; Vol. 4 (4), pp. 1629-1636. Date of Electronic Publication: 2024 Feb 26 (Print Publication: 2024).