Concordant inter-laboratory derived concentrations of ceramides in human plasma reference materials via authentic standards.

Autor: Torta F; Singapore Lipidomics Incubator, Life Sciences Institute, National University of Singapore, Singapore, 117456, Singapore.; Precision Medicine Translational Research Programme and Department of Biochemistry, Yong Loo Lin School of Medicine, National University of Singapore, Singapore, 119077, Singapore.; Signature Research Program in Cardiovascular and Metabolic Disorders, Duke-National University of Singapore (NUS) Medical School, Singapore, 169857, Singapore., Hoffmann N; Institute for Bio- and Geosciences (IBG-5), Forschungszentrum Jülich GmbH, 52428, Jülich, Germany.; Department of Analytical Chemistry, University of Vienna, Vienna, Austria., Burla B; Singapore Lipidomics Incubator, Life Sciences Institute, National University of Singapore, Singapore, 117456, Singapore., Alecu I; Neural Regeneration Laboratory, Ottawa Institute of Systems Biology, Ottawa Brain and Mind Research Institute, Department of Biochemistry, Microbiology, and Immunology, and Department of Chemistry, Centre for Catalysis Research and Innovation, University of Ottawa, Ottawa, K1H 8M5, Canada., Arita M; RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.; Graduate School of Medical Life Science, Yokohama City University, Yokohama, Japan., Bamba T; Division of Metabolomics Center, Medical Research Center for High Depth Omics, Medical Institute of Bioregulation, Kyushu University, 3‑1‑1, Maidashi, Higashi‑ku, Fukuoka, 812‑8582, Japan., Bennett SAL; Neural Regeneration Laboratory, Ottawa Institute of Systems Biology, Ottawa Brain and Mind Research Institute, Department of Biochemistry, Microbiology, and Immunology, and Department of Chemistry, Centre for Catalysis Research and Innovation, University of Ottawa, Ottawa, K1H 8M5, Canada., Bertrand-Michel J; MetaboHUBMetaToul Facility, I2MC U1297 Inserm, Toulouse, France., Brügger B; Heidelberg University Biochemistry Center (BZH), Im Neuenheimer Feld 328, 69120, Heidelberg, Germany., Cala MP; Metabolomics Core Facility-MetCore, Universidad de los Andes, Bogotá, 111711, Colombia., Camacho-Muñoz D; Laboratory for Lipidomics and Lipid Biology, Division of Pharmacy and Optometry, School of Health Sciences, Faculty of Biology Medicine and Health, The University of Manchester, Manchester Academic Health Science Centre, Manchester, M13 9NT, United Kingdom., Checa A; Unit of Integrative Metabolomics, Institute of Environmental Medicine, Karolinska Institutet, Stockholm, Sweden., Chen M; Department of Pathology and Laboratory Medicine, University of British Columbia, Vancouver, BC, Canada., Chocholoušková M; Department of Analytical Chemistry, Faculty of Chemical Technology, University of Pardubice, Studentská 573, 532 10, Pardubice, Czech Republic., Cinel M; Baker Heart and Diabetes Institute, Melbourne, VIC, 3004, Australia.; Baker Department of Cardiovascular Research, Translation and Implementation, La Trobe University, Bundoora, VIC, 3086, Australia., Chu-Van E; Université Paris-Saclay, CEA, INRAE, Département Médicaments et Technologies pour la Santé (DMTS), MetaboHUB, F-91191, Gif sur Yvette, France., Colsch B; Université Paris-Saclay, CEA, INRAE, Département Médicaments et Technologies pour la Santé (DMTS), MetaboHUB, F-91191, Gif sur Yvette, France., Coman C; Department of Analytical Chemistry, University of Vienna, Vienna, Austria., Connell L; Avanti Polar Lipids, Alabaster, AL, USA., Sousa BC; Babraham Institute, Babraham Research Campus, Cambridge, MA, CB22 3AT, USA., Dickens AM; Turku Bioscience Centre, University of Turku and Åbo Akademi University, 20520, Turku, Finland.; Department of Chemistry, University of Turku, Turku, Finland., Fedorova M; Institute of Bioanalytical Chemistry, Faculty of Chemistry and Mineralogy, University of Leipzig, 04013, Leipzig, Germany.; Center for Biotechnology and Biomedicine, University of Leipzig, 04013, Leipzig, Germany.; Center of Membrane Biochemistry and Lipid Research, Faculty of Medicine Carl Gustav Carus of TU Dresden, 01307, Dresden, Germany., Eiríksson FF; Faculty of Pharmaceutical Sciences, University of Iceland, Reykjavik, Iceland.; ArcticMass, Reykjavik, Iceland., Gallart-Ayala H; Metabolomics Platform, Faculty of Biology and Medicine, University of Lausanne, Lausanne, Switzerland., Ghorasaini M; Center for Proteomics and Metabolomics, Leiden University Medical Center, 2333ZA, Leiden, The Netherlands., Giera M; Center for Proteomics and Metabolomics, Leiden University Medical Center, 2333ZA, Leiden, The Netherlands., Guan XL; Lee Kong Chian School of Medicine, Nanyang Technological University, Singapore, 636921, Singapore., Haid M; Metabolomics and Proteomics Core, Helmholtz Zentrum München, German Research Center for Environmental Health, Neuherberg, 85764, Germany., Hankemeier T; Metabolomics and Analytics Centre, Leiden Academic Centre for Drug Research, Leiden University, Leiden, The Netherlands., Harms A; Metabolomics and Analytics Centre, Leiden Academic Centre for Drug Research, Leiden University, Leiden, The Netherlands., Höring M; University Hospital of Regensburg, Institute of Clinical Chemistry and Laboratory Medicine, Franz-Josef-Strauß-Allee 11, 93053, Regensburg, Germany., Holčapek M; Department of Analytical Chemistry, Faculty of Chemical Technology, University of Pardubice, Studentská 573, 532 10, Pardubice, Czech Republic., Hornemann T; Institute of Clinical Chemistry, University Zurich, 8952, Schlieren, Switzerland., Hu C; State Key Laboratory of Medical Proteomics, CAS Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, 116023, China., Hülsmeier AJ; Institute of Clinical Chemistry, University Zurich, 8952, Schlieren, Switzerland., Huynh K; Baker Heart and Diabetes Institute, Melbourne, VIC, 3004, Australia.; Baker Department of Cardiovascular Research, Translation and Implementation, La Trobe University, Bundoora, VIC, 3086, Australia., Jones CM; Chemical Science Division, National Institute of Standards and Technology, Gaithersburg, MD, 20899, USA., Ivanisevic J; Metabolomics Platform, Faculty of Biology and Medicine, University of Lausanne, Lausanne, Switzerland., Izumi Y; Division of Metabolomics Center, Medical Research Center for High Depth Omics, Medical Institute of Bioregulation, Kyushu University, 3‑1‑1, Maidashi, Higashi‑ku, Fukuoka, 812‑8582, Japan., Köfeler HC; Core Facility Mass Spectrometry, Medical University of Graz, 8010, Graz, Austria., Lam SM; LipidALL Technologies, Changzhou, 213000, Jiangshu, China.; State Key Laboratory of Molecular Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, 100101, China., Lange M; Institute of Bioanalytical Chemistry, Faculty of Chemistry and Mineralogy, University of Leipzig, 04013, Leipzig, Germany.; Center for Biotechnology and Biomedicine, University of Leipzig, 04013, Leipzig, Germany., Lee JC; Department of Chemistry, Yonsei University, Seoul, 03722, South Korea., Liebisch G; University Hospital of Regensburg, Institute of Clinical Chemistry and Laboratory Medicine, Franz-Josef-Strauß-Allee 11, 93053, Regensburg, Germany., Lippa K; Chemical Science Division, National Institute of Standards and Technology, Gaithersburg, MD, 20899, USA., Lopez-Clavijo AF; Babraham Institute, Babraham Research Campus, Cambridge, MA, CB22 3AT, USA., Manzi M; Centro de Investigaciones en Bionanociencias (CIBION), Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Godoy Cruz 2390, C1425FQD, Ciudad de Buenos Aires, Argentina.; Departamento de Fisiología, Biología Molecular y Celular, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Intendente Güiraldes, 2160 C1428EGA, Buenos Aires, Argentina.; Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Departamento de Desarrollo Analítico y Control de Procesos, Instituto Nacional de Tecnología Industrial, Av. General Paz 5445, B1650WAB, Buenos Aires, Argentina., Martinefski MR; Centro de Investigaciones en Bionanociencias (CIBION), Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Godoy Cruz 2390, C1425FQD, Ciudad de Buenos Aires, Argentina.; Universidad de Buenos Aires, Facultad de Farmacia y Bioquímica, Departamento de Ciencias Químicas, Buenos Aires, Junin 954, Junin, C1113AAD, CABA, Argentina., Math RGH; National Centre for Biological Sciences, Tata Institute of Fundamental Research, Bangalore, Karnataka, 560065, India., Mayor S; National Centre for Biological Sciences, Tata Institute of Fundamental Research, Bangalore, Karnataka, 560065, India., Meikle PJ; Baker Heart and Diabetes Institute, Melbourne, VIC, 3004, Australia.; Baker Department of Cardiovascular Research, Translation and Implementation, La Trobe University, Bundoora, VIC, 3086, Australia., Monge ME; Centro de Investigaciones en Bionanociencias (CIBION), Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Godoy Cruz 2390, C1425FQD, Ciudad de Buenos Aires, Argentina., Moon MH; Department of Chemistry, Yonsei University, Seoul, 03722, South Korea., Muralidharan S; Singapore Lipidomics Incubator, Life Sciences Institute, National University of Singapore, Singapore, 117456, Singapore.; National Centre for Biological Sciences, Tata Institute of Fundamental Research, Bangalore, Karnataka, 560065, India., Nicolaou A; Laboratory for Lipidomics and Lipid Biology, Division of Pharmacy and Optometry, School of Health Sciences, Faculty of Biology Medicine and Health, The University of Manchester, Manchester Academic Health Science Centre, Manchester, M13 9NT, United Kingdom.; Lydia Becker Institute of Immunology and Inflammation; Faculty of Biology, Medicine and Health, The University of Manchester, Manchester Academic Health Science Centre, Manchester, M13 9NT, United Kingdom., Nguyen-Tran T; Neural Regeneration Laboratory, Ottawa Institute of Systems Biology, Ottawa Brain and Mind Research Institute, Department of Biochemistry, Microbiology, and Immunology, and Department of Chemistry, Centre for Catalysis Research and Innovation, University of Ottawa, Ottawa, K1H 8M5, Canada., O'Donnell VB; Systems Immunity Research Institute, School of Medicine, Cardiff University, Heath Park, Cardiff, CF14 4XN, UK., Orešič M; Turku Bioscience Centre, University of Turku and Åbo Akademi University, 20520, Turku, Finland.; School of Medical Sciences, Faculty of Medicine and Health, Örebro University, 702 81, Örebro, Sweden., Ramanathan A; Institute for Stem Cell Science and Regenerative Medicine, 560065, Bangalore, India., Riols F; Metabolomics and Proteomics Core, Helmholtz Zentrum München, German Research Center for Environmental Health, Neuherberg, 85764, Germany., Saigusa D; Laboratory of Biomedical and Analytical Sciences, Faculty of Pharma-Science, Teikyo University, 2-11-1 Kaga, Itabashi-ku, Tokyo, 173-8605, Japan.; Department of Integrative Genomics, Tohoku Medical Megabank Organization, Tohoku University, 2-1 Seiryo-machi, Aoba-ku, Sendai, Miyagi, 980-8573, Japan., Schock TB; Chemical Science Division, National Institute of Standards and Technology, Charleston, SC, 29412, USA., Schwartz-Zimmermann H; Christian Doppler Laboratory for Innovative Gut Health Concepts of Livestock, Institute of Bioanalytics and Agro-Metabolomics, Department of Agrobiotechnology (IFATulln), University of Natural Resources and Life Sciences, Vienna (BOKU), Konrad-Lorenz-Str. 20, 3430, Tulln, Austria., Shui G; State Key Laboratory of Molecular Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, 100101, China., Singh M; Metabolomics and Analytics Centre, Leiden Academic Centre for Drug Research, Leiden University, Leiden, The Netherlands., Takahashi M; Division of Metabolomics Center, Medical Research Center for High Depth Omics, Medical Institute of Bioregulation, Kyushu University, 3‑1‑1, Maidashi, Higashi‑ku, Fukuoka, 812‑8582, Japan., Thorsteinsdóttir M; Faculty of Pharmaceutical Sciences, University of Iceland, Reykjavik, Iceland.; ArcticMass, Reykjavik, Iceland., Tomiyasu N; Division of Metabolomics Center, Medical Research Center for High Depth Omics, Medical Institute of Bioregulation, Kyushu University, 3‑1‑1, Maidashi, Higashi‑ku, Fukuoka, 812‑8582, Japan., Tournadre A; MetaboHUBMetaToul Facility, I2MC U1297 Inserm, Toulouse, France., Tsugawa H; RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.; Graduate School of Medical Life Science, Yokohama City University, Yokohama, Japan.; RIKEN Center for Sustainable Resource Science, Yokohama, Japan.; Department of Biotechnology and Life Science, Tokyo University of Agriculture and Technology, Tokyo, Japan., Tyrrell VJ; Systems Immunity Research Institute, School of Medicine, Cardiff University, Heath Park, Cardiff, CF14 4XN, UK., van der Gugten G; St. Paul's Hospital, Department of Pathology and Laboratory Medicine, Vancouver, BC, Canada., Wakelam MO; Babraham Institute, Babraham Research Campus, Cambridge, MA, CB22 3AT, USA., Wheelock CE; Unit of Integrative Metabolomics, Institute of Environmental Medicine, Karolinska Institutet, Stockholm, Sweden.; Department of Respiratory Medicine and Allergy, Karolinska University Hospital, Stockholm, Sweden., Wolrab D; Department of Analytical Chemistry, Faculty of Chemical Technology, University of Pardubice, Studentská 573, 532 10, Pardubice, Czech Republic., Xu G; State Key Laboratory of Medical Proteomics, CAS Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, 116023, China., Xu T; State Key Laboratory of Medical Proteomics, CAS Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, 116023, China., Bowden JA; Department of Physiological Sciences, College of Veterinary Medicine, University of Florida, Gainesville, FL, 32610, USA., Ekroos K; Lipidomics Consulting Ltd., Espoo, Finland. kim@lipidomicsconsulting.com., Ahrends R; Department of Analytical Chemistry, University of Vienna, Vienna, Austria. robert.ahrends@univie.ac.at., Wenk MR; Singapore Lipidomics Incubator, Life Sciences Institute, National University of Singapore, Singapore, 117456, Singapore. mwenk@hbku.edu.qa.; Precision Medicine Translational Research Programme and Department of Biochemistry, Yong Loo Lin School of Medicine, National University of Singapore, Singapore, 119077, Singapore. mwenk@hbku.edu.qa.; College of Health and Life Sciences, Hamad Bin Khalifa University, Doha, Qatar. mwenk@hbku.edu.qa.

Publikováno v: Nature communications [Nat Commun] 2024 Oct 03; Vol. 15 (1), pp. 8562. Date of Electronic Publication: 2024 Oct 03.

Retention dependences support highly confident identification of lipid species in human plasma by reversed-phase UHPLC/MS.

Autor: Vaňková Z; Faculty of Chemical Technology, Department of Analytical Chemistry, University of Pardubice, Studentská 573, 53210, Pardubice, Czech Republic., Peterka O; Faculty of Chemical Technology, Department of Analytical Chemistry, University of Pardubice, Studentská 573, 53210, Pardubice, Czech Republic., Chocholoušková M; Faculty of Chemical Technology, Department of Analytical Chemistry, University of Pardubice, Studentská 573, 53210, Pardubice, Czech Republic., Wolrab D; Faculty of Chemical Technology, Department of Analytical Chemistry, University of Pardubice, Studentská 573, 53210, Pardubice, Czech Republic., Jirásko R; Faculty of Chemical Technology, Department of Analytical Chemistry, University of Pardubice, Studentská 573, 53210, Pardubice, Czech Republic., Holčapek M; Faculty of Chemical Technology, Department of Analytical Chemistry, University of Pardubice, Studentská 573, 53210, Pardubice, Czech Republic. Michal.Holcapek@upce.cz.

Publikováno v: Analytical and bioanalytical chemistry [Anal Bioanal Chem] 2022 Jan; Vol. 414 (1), pp. 319-331. Date of Electronic Publication: 2021 Jul 09.

Corrigendum to: LipidQuant 1.0: automated data processing in lipid class separation-mass spectrometry quantitative workflows.

Autor: Wolrab D, Cífková E, Čáň P, Lísa M, Peterka O, Chocholoušková M, Jirásko R, Holčapek M

Publikováno v: Bioinformatics (Oxford, England) [Bioinformatics] 2021 Dec 11; Vol. 37 (24), pp. 4903.

Simple and Reproducible Derivatization with Benzoyl Chloride: Improvement of Sensitivity for Multiple Lipid Classes in RP-UHPLC/MS.

Autor: Peterka O; University of Pardubice, Faculty of Chemical Technology, Department of Analytical Chemistry, Studentská 573, 532 10 Pardubice, Czech Republic., Jirásko R; University of Pardubice, Faculty of Chemical Technology, Department of Analytical Chemistry, Studentská 573, 532 10 Pardubice, Czech Republic., Vaňková Z; University of Pardubice, Faculty of Chemical Technology, Department of Analytical Chemistry, Studentská 573, 532 10 Pardubice, Czech Republic., Chocholoušková M; University of Pardubice, Faculty of Chemical Technology, Department of Analytical Chemistry, Studentská 573, 532 10 Pardubice, Czech Republic., Wolrab D; University of Pardubice, Faculty of Chemical Technology, Department of Analytical Chemistry, Studentská 573, 532 10 Pardubice, Czech Republic., Kulhánek J; University of Pardubice, Institute of Organic Chemistry and Technology, Studentská 573, 532 10 Pardubice, Czech Republic., Bureš F; University of Pardubice, Institute of Organic Chemistry and Technology, Studentská 573, 532 10 Pardubice, Czech Republic., Holčapek M; University of Pardubice, Faculty of Chemical Technology, Department of Analytical Chemistry, Studentská 573, 532 10 Pardubice, Czech Republic.

Publikováno v: Analytical chemistry [Anal Chem] 2021 Oct 19; Vol. 93 (41), pp. 13835-13843. Date of Electronic Publication: 2021 Oct 08.

Multiomics of synaptic junctions reveals altered lipid metabolism and signaling following environmental enrichment.

Autor: Borgmeyer M; Leibniz Group 'Dendritic Organelles and Synaptic Function,' University Medical Center Hamburg-Eppendorf, Center for Molecular Neurobiology, ZMNH, 20251 Hamburg, Germany; RG Neuroplasticity, Leibniz Institute for Neurobiology, 39118 Magdeburg, Germany., Coman C; Leibniz-Institut für Analytische Wissenschaften-ISAS-e.V., 44227 Dortmund, Germany; Department of Analytical Chemistry, Faculty of Chemistry, University of Vienna, 1090 Wien, Austria., Has C; Leibniz-Institut für Analytische Wissenschaften-ISAS-e.V., 44227 Dortmund, Germany., Schött HF; Leibniz-Institut für Analytische Wissenschaften-ISAS-e.V., 44227 Dortmund, Germany., Li T; Leibniz-Institut für Analytische Wissenschaften-ISAS-e.V., 44227 Dortmund, Germany., Westhoff P; Leibniz-Institut für Analytische Wissenschaften-ISAS-e.V., 44227 Dortmund, Germany., Cheung YFH; Leibniz-Institut für Analytische Wissenschaften-ISAS-e.V., 44227 Dortmund, Germany., Hoffmann N; Leibniz-Institut für Analytische Wissenschaften-ISAS-e.V., 44227 Dortmund, Germany., Yuanxiang P; RG Neuroplasticity, Leibniz Institute for Neurobiology, 39118 Magdeburg, Germany., Behnisch T; Institutes of Brain Science, State Key Laboratory of Medical Neurobiology and MOE Frontiers Center for Brain Science, Fudan University, Shanghai 200032, China., Gomes GM; RG Neuroplasticity, Leibniz Institute for Neurobiology, 39118 Magdeburg, Germany., Dumenieu M; RG Neuroplasticity, Leibniz Institute for Neurobiology, 39118 Magdeburg, Germany., Schweizer M; Morphology and Electron Microscopy, University Medical Center Hamburg-Eppendorf, Center for Molecular Neurobiology, ZMNH, 20251 Hamburg, Germany., Chocholoušková M; University of Pardubice, Department of Analytical Chemistry, CZ-532 10 Pardubice, Czech Republic., Holčapek M; University of Pardubice, Department of Analytical Chemistry, CZ-532 10 Pardubice, Czech Republic., Mikhaylova M; Emmy Noether Group 'Neuronal Protein Transport,' University Medical Center Hamburg-Eppendorf, Center for Molecular Neurobiology, ZMNH, 20251 Hamburg, Germany; AG Optobiology, Institute for Biology, Humboldt Universität zu Berlin, 10115 Berlin, Germany., Kreutz MR; Leibniz Group 'Dendritic Organelles and Synaptic Function,' University Medical Center Hamburg-Eppendorf, Center for Molecular Neurobiology, ZMNH, 20251 Hamburg, Germany; RG Neuroplasticity, Leibniz Institute for Neurobiology, 39118 Magdeburg, Germany; German Center for Neurodegenerative Diseases (DZNE), 39120 Magdeburg, Germany; Center for Behavioral Brain Sciences, 30120 Magdeburg, Germany. Electronic address: michael.kreutz@zmnh.uni-hamburg.de., Ahrends R; Leibniz-Institut für Analytische Wissenschaften-ISAS-e.V., 44227 Dortmund, Germany; Department of Analytical Chemistry, Faculty of Chemistry, University of Vienna, 1090 Wien, Austria. Electronic address: robert.ahrends@univie.ac.at.

Publikováno v: Cell reports [Cell Rep] 2021 Oct 05; Vol. 37 (1), pp. 109797.