Zobrazeno 1 - 10
of 59
pro vyhledávání: '"Chikatoshi Kai"'
Autor:
Ulf Schaefer, Rimantas Kodzius, Chikatoshi Kai, Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, Vladimir B Bajic
Publikováno v:
PLoS ONE, Vol 5, Iss 11, p e13934 (2010)
BackgroundAlthough transcription in mammalian genomes can initiate from various genomic positions (e.g., 3'UTR, coding exons, etc.), most locations on genomes are not prone to transcription initiation. It is of practical and theoretical interest to b
Externí odkaz:
https://doaj.org/article/771d124439074b98abc5b3c6bfbe6807
Autor:
Martin C Frith, Laurens G Wilming, Alistair Forrest, Hideya Kawaji, Sin Lam Tan, Claes Wahlestedt, Vladimir B Bajic, Chikatoshi Kai, Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, Timothy L Bailey, Lukasz Huminiecki
Publikováno v:
PLoS Genetics, Vol 2, Iss 4, p e23 (2006)
The mammalian transcriptome harbours shadowy entities that resist classification and analysis. In analogy with pseudogenes, we define pseudo-messenger RNA to be RNA molecules that resemble protein-coding mRNA, but cannot encode full-length proteins o
Externí odkaz:
https://doaj.org/article/73e747585289450d9fbf58e975525f82
Autor:
Masaaki Furuno, Ken C Pang, Noriko Ninomiya, Shiro Fukuda, Martin C Frith, Carol Bult, Chikatoshi Kai, Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, John S Mattick, Harukazu Suzuki
Publikováno v:
PLoS Genetics, Vol 2, Iss 4, p e37 (2006)
Non-protein-coding RNAs (ncRNAs) are increasingly being recognized as having important regulatory roles. Although much recent attention has focused on tiny 22- to 25-nucleotide microRNAs, several functional ncRNAs are orders of magnitude larger in si
Externí odkaz:
https://doaj.org/article/90c32b0d57dc4c4fa87080183428175c
Autor:
Melissa J Davis, Kelly A Hanson, Francis Clark, J Lynn Fink, Fasheng Zhang, Takeya Kasukawa, Chikatoshi Kai, Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, Rohan D Teasdale
Publikováno v:
PLoS Genetics, Vol 2, Iss 4, p e46 (2006)
Membrane organization describes the orientation of a protein with respect to the membrane and can be determined by the presence, or absence, and organization within the protein sequence of two features: endoplasmic reticulum signal peptides and alpha
Externí odkaz:
https://doaj.org/article/bc35ec93197a4245857a1d9865909888
Autor:
Martin C Frith, Alistair R Forrest, Ehsan Nourbakhsh, Ken C Pang, Chikatoshi Kai, Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, Timothy L Bailey, Sean M Grimmond
Publikováno v:
PLoS Genetics, Vol 2, Iss 4, p e52 (2006)
Short proteins play key roles in cell signalling and other processes, but their abundance in the mammalian proteome is unknown. Current catalogues of mammalian proteins exhibit an artefactual discontinuity at a length of 100 aa, so that protein abund
Externí odkaz:
https://doaj.org/article/c3347406a504491fa97d734ab41ce88d
Autor:
Tzu-Ming Chern, Erik van Nimwegen, Chikatoshi Kai, Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, Mihaela Zavolan
Publikováno v:
PLoS Genetics, Vol 2, Iss 4, p e45 (2006)
One of the most common splice variations are small exon length variations caused by the use of alternative donor or acceptor splice sites that are in very close proximity on the pre-mRNA. Among these, three-nucleotide variations at so-called NAGNAG t
Externí odkaz:
https://doaj.org/article/e535101667854b7f888c5177f2ea33cf
Autor:
Norihiro Maeda, Takeya Kasukawa, Rieko Oyama, Julian Gough, Martin Frith, Pär G Engström, Boris Lenhard, Rajith N Aturaliya, Serge Batalov, Kirk W Beisel, Carol J Bult, Colin F Fletcher, Alistair R R Forrest, Masaaki Furuno, David Hill, Masayoshi Itoh, Mutsumi Kanamori-Katayama, Shintaro Katayama, Masaru Katoh, Tsugumi Kawashima, John Quackenbush, Timothy Ravasi, Brian Z Ring, Kazuhiro Shibata, Koji Sugiura, Yoichi Takenaka, Rohan D Teasdale, Christine A Wells, Yunxia Zhu, Chikatoshi Kai, Jun Kawai, David A Hume, Piero Carninci, Yoshihide Hayashizaki
Publikováno v:
PLoS Genetics, Vol 2, Iss 4, p e62 (2006)
The international FANTOM consortium aims to produce a comprehensive picture of the mammalian transcriptome, based upon an extensive cDNA collection and functional annotation of full-length enriched cDNAs. The previous dataset, FANTOM2, comprised 60,7
Externí odkaz:
https://doaj.org/article/715f2767f50e469fbc189398f0eb0f8f
Autor:
Vladimir B Bajic, Sin Lam Tan, Alan Christoffels, Christian Schönbach, Leonard Lipovich, Liang Yang, Oliver Hofmann, Adele Kruger, Winston Hide, Chikatoshi Kai, Jun Kawai, David A Hume, Piero Carninci, Yoshihide Hayashizaki
Publikováno v:
PLoS Genetics, Vol 2, Iss 4, p e54 (2006)
Using the two largest collections of Mus musculus and Homo sapiens transcription start sites (TSSs) determined based on CAGE tags, ditags, full-length cDNAs, and other transcript data, we describe the compositional landscape surrounding TSSs with the
Externí odkaz:
https://doaj.org/article/ba7df728957c4c7787a9505a9ecb64bc
Autor:
Pär G Engström, Harukazu Suzuki, Noriko Ninomiya, Altuna Akalin, Luca Sessa, Giovanni Lavorgna, Alessandro Brozzi, Lucilla Luzi, Sin Lam Tan, Liang Yang, Galih Kunarso, Edwin Lian-Chong Ng, Serge Batalov, Claes Wahlestedt, Chikatoshi Kai, Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, Christine Wells, Vladimir B Bajic, Valerio Orlando, James F Reid, Boris Lenhard, Leonard Lipovich
Publikováno v:
PLoS Genetics, Vol 2, Iss 4, p e47 (2006)
Mammalian genomes harbor a larger than expected number of complex loci, in which multiple genes are coupled by shared transcribed regions in antisense orientation and/or by bidirectional core promoters. To determine the incidence, functional signific
Externí odkaz:
https://doaj.org/article/b98bcc6724cf40cdabf42933acd063ca
Autor:
Shigeto Seno, Yoichi Takenaka, Chikatoshi Kai, Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, Hideo Matsuda
Publikováno v:
PLoS Genetics, Vol 2, Iss 4, p e44 (2006)
With the advancement of genome research, it is becoming clear that genes are not distributed on the genome in random order. Clusters of genes distributed at localized genome positions have been reported in several eukaryotes. Various correlations hav
Externí odkaz:
https://doaj.org/article/6c64af04c12642149495086c306dd2b5