Zobrazeno 1 - 10
of 14
pro vyhledávání: '"Chikako Ragan"'
Autor:
Yalin Liao, Alfredo Castello, Bernd Fischer, Stefan Leicht, Sophia Föehr, Christian K. Frese, Chikako Ragan, Sebastian Kurscheid, Eloisa Pagler, Hao Yang, Jeroen Krijgsveld, Matthias W. Hentze, Thomas Preiss
Publikováno v:
Cell Reports, Vol 16, Iss 5, Pp 1456-1469 (2016)
RNA functions through the dynamic formation of complexes with RNA-binding proteins (RBPs) in all clades of life. We determined the RBP repertoire of beating cardiomyocytic HL-1 cells by jointly employing two in vivo proteomic methods, mRNA interactom
Externí odkaz:
https://doaj.org/article/067299274f904368916a5098e226b4ce
Publikováno v:
PLoS Computational Biology, Vol 7, Iss 2, p e1001090 (2011)
MicroRNAs (miRNAs) suppress gene expression by forming a duplex with a target messenger RNA (mRNA), blocking translation or initiating cleavage. Computational approaches have proven valuable for predicting which mRNAs can be targeted by a given miRNA
Externí odkaz:
https://doaj.org/article/8654742d22b243c2b80127fcb7f473ad
Publikováno v:
PLoS ONE, Vol 4, Iss 5, p e5745 (2009)
Transcriptional regulation by microRNAs (miRNAs) involves complementary base-pairing at target sites on mRNAs, yielding complex secondary structures. Here we introduce an efficient computational approach and software (FASTH) for genome-scale predicti
Externí odkaz:
https://doaj.org/article/a02d4d33919a464b82f25c6f74c0c49b
Publikováno v:
PLoS ONE, Vol 4, Iss 7 (2009)
Externí odkaz:
https://doaj.org/article/917c2f43dbac4ec4ab0eb4789686fdef
Publikováno v:
Scientific Reports, Vol 9, Iss 1, Pp 1-18 (2019)
Scientific Reports
Scientific Reports
Circular RNAs (circRNAs) exhibit unique properties due to their covalently closed nature. Models of circRNAs synthesis and function are emerging but much remains undefined about this surprisingly prevalent class of RNA. Here, we identified exonic cir
Autor:
Svetlana A. Shabalina, Olga V. Matveeva, Yury D. Nechipurenko, Nafisa N. Nazipova, Aleksey Y. Ogurtsov, Evgeniy Riabenko, Chikako Ragan
Publikováno v:
Bioinformatics. 32:i552-i558
Motivation: Target-specific hybridization depends on oligo-probe characteristics that improve hybridization specificity and minimize genome-wide cross-hybridization. Interplay between specific hybridization and genome-wide cross-hybridization has bee
Autor:
Chikako Ragan, Yalin Liao, Marlene Reichel, Thomas Preiss, Rastislav Horos, Maurits Evers, Anne-Marie Alleaume, Matthias W. Hentze, Mandy Rettel, Anthony A. Millar
Publikováno v:
The Plant cell. 28(10)
RNA binding proteins (RBPs) control the fate and expression of a transcriptome. Despite this fundamental importance, our understanding of plant RBPs is rudimentary, being mainly derived via bioinformatic extrapolation from other kingdoms. Here, we ad
Autor:
Stefan Leicht, Hao Yang, Matthias W. Hentze, Thomas Preiss, Chikako Ragan, Yalin Liao, Alfredo Castello, Jeroen Krijgsveld, Bernd Fischer, Eloisa Pagler, Christian K. Frese, Sophia Foehr, Sebastian Kurscheid
Publikováno v:
Cell Reports, Vol 16, Iss 5, Pp 1456-1469 (2016)
Europe PubMed Central
Cell Reports
Europe PubMed Central
Cell Reports
Summary RNA functions through the dynamic formation of complexes with RNA-binding proteins (RBPs) in all clades of life. We determined the RBP repertoire of beating cardiomyocytic HL-1 cells by jointly employing two in vivo proteomic methods, mRNA in
Publikováno v:
Schizophrenia research. 183
MicroRNAs (miRNAs) are known to regulate the expression of genes that are important for brain development and function, but the roles of other classes of small non-coding RNAs (sncRNAs) are less well understood. Additionally, although miRNA expressio
Publikováno v:
Nucleic Acids Research
Recent advances in RNA sequencing technology (RNA-Seq) enables comprehensive profiling of RNAs by producing millions of short sequence reads from size-fractionated RNA libraries. Although conventional tools for detecting and distinguishing non-coding