Zobrazeno 1 - 10 of 69 pro vyhledávání: '"Chauvot de Beauchêne, Isaure"'
1
Akademický článek
Docking software performance in protein-glycosaminoglycan systems
Autor: Uciechowska-Kaczmarzyk, Urszula, Chauvot de Beauchene, Isaure, Samsonov, Sergey A.
Publikováno v: In Journal of Molecular Graphics and Modelling July 2019 90:42-50
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2
CroMaSt: A workflow for domain family curation through cross-mapping of structural instances between protein domain databases
Autor: Dhondge, Hrishikesh, Chauvot de Beauchêne, Isaure, Devignes, Marie-Dominique
Publikováno v: ECCB2022-21st European Conference on Computational Biology
ECCB2022-21st European Conference on Computational Biology, Sep 2022, Sitges, Spain. ⟨10.48546/WORKFLOWHUB.WORKFLOW.390.1⟩
International audience; Protein domains can be viewed as building blocks, essential for understanding structure-function relationships in proteins. However, each domain database classifies protein domains using its own methodology. Thus, in many case
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0b92dc02a7de6e9c8cac167bec14b451
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3
Inferring Epsilon-nets of Finite Sets in a RKHS
Autor: Moniot, Antoine, Chauvot de Beauchêne, Isaure, Guermeur, Yann
Publikováno v: Proceedings of the 14th International Workshop, Lecture Notes in Networks and Systems-LNNS
Advances in Self-Organizing Maps, Learning Vector Quantization, Clustering and Data Visualization. WSOM-2022
Advances in Self-Organizing Maps, Learning Vector Quantization, Clustering and Data Visualization. WSOM-2022, Jul 2022, Prague, Czech Republic. pp.53-62, ⟨10.1007/978-3-031-15444-7_6⟩
International audience; We introduce a method to derive epsilon-nets of finite sets. It operates in a reproducing kernel Hilbert space. Its principle combines two well-known tools of empirical inference: the hierarchical agglomerative clustering and
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od_______165::fe12c6ec5d0d707a941dedc3ca71a006
https://hal.science/hal-03651323/document
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4
Akademický článek
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5
Akademický článek
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7
New clustering method to infer prototypes covering the 3D structures of nucleic acid fragments
Autor: Moniot, Antoine, Chauvot de Beauchêne, Isaure, Guermeur, Yann
Publikováno v: RECOMB 2021-25th International conference on research in computational molecular biology
RECOMB 2021-25th International conference on research in computational molecular biology, Aug 2021, Padova/Virtual, Italy
International audience; In structural biology, many fragment-based 3D modeling methods require fragment libraries.They represent the whole set of possible 3D structures (conformations) observed experimentally for each fragment, with a chosen precisio
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::030ff2fda7781b5654ff295a458d7980
https://hal.archives-ouvertes.fr/hal-03432671/file/poster.pdf
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8
Data-driven identification of structural patterns associated with RNA binding in RNA Recognition Motif domains
Autor: Dhondge, Hrishikesh, Joel Roca, Martínez, Wim, Vranken, Devignes, Marie-Dominique, Chauvot de Beauchêne, Isaure
Publikováno v: Student Council Symposium (SCS) 2021
Student Council Symposium (SCS) 2021, Jul 2021, Virtual, France
International audience; Proteins containing one or more RNA Recognition Motif (RRM) domains perform important regulation functions through binding to specific RNA sequences. Our project is to help design new RRM proteins by providing data-driven rule
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od_______165::e61186d22cf65935dddc4552910be441
https://hal.science/hal-03784168/document
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9
New strategy for optimizing knowledge-based docking parameters: application to ssRNA-protein docking
Autor: Kravchenko, Anna, Smail-Tabbone, Malika, Chauvot de Beauchêne, Isaure, De Vries, Sjoerd Jacob
Publikováno v: JOBIM 2021-Journées Ouvertes en Biologie, Informatique et Mathématiques
JOBIM 2021-Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2021, Paris, France
International audience; Computational prediction of a 3D structure of a molecular complex, also known as docking, is essential in modern biological research. It can complement MD, provide working directions to experimentalists, etc. We are invested i
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::be01f9eee06c376b0b17c639eadfa109
https://hal.science/hal-03370998
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10
Feature extraction for the clustering of small 3D structures: application to RNA fragments
Autor: Delannoy, Alix, Moniot, Antoine, Guermeur, Yann, Chauvot de Beauchêne, Isaure
Publikováno v: JOBIM 2021-Journées Ouvertes en Biologie, Informatique et Mathématiques
JOBIM 2021-Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2021, Paris/Virtual, France. pp.1-6
Actes JOBIM 2021
JOBIM 2021-Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2021, Paris, France
International audience; Structural libraries of fragments are commonly used to model or design the 3D structure of biomolecules (drugs, peptides, nucleic acids). They typically approximate all possible local conformations of these molecules within a
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::8659b03c7a3aed133835972fa08f3127
https://hal.science/hal-03540927
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