Zobrazeno 1 - 10
of 16
pro vyhledávání: '"Charlotte Cockram"'
Publikováno v:
STAR Protocols, Vol 2, Iss 2, Pp 100512- (2021)
Summary: Chromosome conformation capture (Hi-C) has become a routine method for probing the 3D organization of genomes. However, when applied to bacteria and archaea, current protocols are expensive and limited in their resolution. By dissecting the
Externí odkaz:
https://doaj.org/article/fcf80b5bcb4e49dfa9d82b63f695331d
Autor:
Elise Vickridge, Charlene Planchenault, Charlotte Cockram, Isabel Garcia Junceda, Olivier Espéli
Publikováno v:
Nature Communications, Vol 8, Iss 1, Pp 1-12 (2017)
Homologous recombination of DNA lesions in bacteria involves sister chromatid pairing. Here, the authors show that RecN promotes contacts between sister chromatids and facilitates repair.
Externí odkaz:
https://doaj.org/article/56e1293a7a064096b143aa204a7cf6c9
Autor:
Daniel Schindler, Roy S.K. Walker, Shuangying Jiang, Aaron N. Brooks, Yun Wang, Carolin A. Müller, Charlotte Cockram, Yisha Luo, Alicia García, Daniel Schraivogel, Julien Mozziconacci, Benjamin A. Blount, Jitong Cai, Lois Ogunlana, Wei Liu, Katarina Jönsson, Dariusz Abramczyk, Eva Garcia-Ruiz, Tomasz W. Turowski, Reem Swidah, Tom Ellis, Francisco Antequera, Yue Shen, Conrad A. Nieduszynski, Romain Koszul, Junbiao Dai, Lars M. Steinmetz, Jef D. Boeke, Yizhi Cai
Here we report the design, construction and characterization of a tRNA neochromosome, a designer chromosome that functions as an additional, de novo counterpart to the native complement of Saccharomyces cerevisiae. Intending to address one of the cen
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::cc49c630d11fb6cf58c3ffb12496ed73
https://doi.org/10.1101/2022.10.03.510608
https://doi.org/10.1101/2022.10.03.510608
Autor:
Amaury Bignaud, Charlotte Cockram, Eric Allemand, Julien Mozziconnacci, Olivier Espeli, Romain Koszul
Transcription generates local topological and mechanical constraints along the DNA fiber, driving for instance the generation of supercoiled chromosomal domains in bacteria. However, the global impact of transcription-based regulation of chromosome o
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6859bf226312eb2ccab81472a8fc0d01
https://doi.org/10.1101/2022.09.16.507559
https://doi.org/10.1101/2022.09.16.507559
Autor:
Charlotte Cockram, Agnès Thierry
Publikováno v:
Hi-C Data Analysis
Hi-C Data Analysis, 2301, Springer US, pp.183-195, 2021, Methods in Molecular Biology, 978-1-0716-1390-0. ⟨10.1007/978-1-0716-1390-0_9⟩
Methods in Molecular Biology ISBN: 9781071613894
Hi-C Data Analysis, 2301, Springer US, pp.183-195, 2021, Methods in Molecular Biology, 978-1-0716-1390-0. ⟨10.1007/978-1-0716-1390-0_9⟩
Methods in Molecular Biology ISBN: 9781071613894
International audience; During the past decade, Chromosome Conformation Capture (3C/Hi-C)-based methods have been used to probe the 3D structure and organization of bacterial genomes, revealing fundamental aspects of chromosome dynamics. However, the
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::df10c5e1eb1c58dfa71595edb3c92f2b
https://hal-pasteur.archives-ouvertes.fr/pasteur-03686079/document
https://hal-pasteur.archives-ouvertes.fr/pasteur-03686079/document
Autor:
Agnès, Thierry, Charlotte, Cockram
Publikováno v:
Methods in molecular biology (Clifton, N.J.). 2301
During the past decade, Chromosome Conformation Capture (3C/Hi-C)-based methods have been used to probe the 3D structure and organization of bacterial genomes, revealing fundamental aspects of chromosome dynamics. However, the current protocols are e
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=pmid________::948027dbbfbf7b9896457b0005f43936
https://pubmed.ncbi.nlm.nih.gov/34415536
https://pubmed.ncbi.nlm.nih.gov/34415536
Autor:
Thomas Obadia, Solen Kernéis, Konstantinos Zannis, Cliona Ni Cheallaigh, Laura Garcia, María Victoria González, Tom Woudenberg, Samira Fafi-Kremer, Stéphane Petres, Jérôme De Seze, Benjamin Terrier, François Dejardin, Delphine Planas, Marija Backovic, Ivo Mueller, Françoise Donnadieu, Laurence Arowas, Charlotte Cockram, Aurélie Velay, Darragh Duffy, Bruno Hoen, Nizar Khelil, Louise Perrin de Facci, Sarah H. Merkling, Timothée Bruel, Heidi Auerswald, Annalisa Meola, Arnaud Fontanet, Jacques Yves Nizou, Niall Conlon, Cassandre Von Platen, Soazic Gardais, Yasmine Elgharbawy, Olivier Schwartz, Michael A. White, Liam Townsend, Jason Rosado, Stéphane Pelleau
Publikováno v:
HAL
Infection with severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) induces a complex antibody response that varies by orders of magnitude between individuals and over time. Waning antibody levels lead to reduced sensitivity of serological di
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d5ae138fab1ae41a8fe07619ffc5f2a7
https://hal-pasteur.archives-ouvertes.fr/pasteur-03161603/document
https://hal-pasteur.archives-ouvertes.fr/pasteur-03161603/document
Publikováno v:
Molecular Cell
Molecular Cell, Elsevier, 2021, 81 (3), pp.459-472.e10. ⟨10.1016/j.molcel.2020.12.013⟩
Molecular Cell, 2021, 81 (3), pp.459-472.e10. ⟨10.1016/j.molcel.2020.12.013⟩
Molecular Cell, Elsevier, 2021, 81 (3), pp.459-472.e10. ⟨10.1016/j.molcel.2020.12.013⟩
Molecular Cell, 2021, 81 (3), pp.459-472.e10. ⟨10.1016/j.molcel.2020.12.013⟩
International audience; Hi-C has become a routine method for probing the 3D organization of genomes. However, when applied to prokaryotes and archaea, the current protocols are expensive and limited in their resolution. We develop a cost-effective Hi
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c9e3918089926550a24f03173c33da33
https://hal.archives-ouvertes.fr/hal-03379787
https://hal.archives-ouvertes.fr/hal-03379787
Autor:
Céline Lorioux, Robert A. Gaultney, Jean-Yves Coppée, Charlotte Cockram, Odile Sismeiro, Rachel Legendre, Frédéric J. Veyrier, Mathieu Picardeau, Hugo Varet, Antony T. Vincent
Publikováno v:
Nucleic Acids Research
Nucleic Acids Research, Oxford University Press, 2020, pp.gkaa966. ⟨10.1093/nar/gkaa966⟩
Nucleic Acids Research, 2020, pp.gkaa966. ⟨10.1093/nar/gkaa966⟩
Nucleic Acids Research, Oxford University Press, 2020, pp.gkaa966. ⟨10.1093/nar/gkaa966⟩
Nucleic Acids Research, 2020, pp.gkaa966. ⟨10.1093/nar/gkaa966⟩
In bacteria, DNA methylation can be facilitated by ‘orphan’ DNA methyltransferases lacking cognate restriction endonucleases, but whether and how these enzymes control key cellular processes are poorly understood. The effects of a specific modifi
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2532df0cd60ea92ad8d83c5bfb4c7e34
https://hal-pasteur.archives-ouvertes.fr/pasteur-03006760
https://hal-pasteur.archives-ouvertes.fr/pasteur-03006760
Autor:
François Dejardin, Caroline Demeret, Narimane Nekkab, Charlotte Cockram, Michael T. White, Rhea J. Longley, Annalisa Meola, Marija Backovic, Sarah H. Merkling, Stéphane Petres, Jérôme De Seze, Ivo Mueller, Solen Kernéis, Samira Fafi-Kremer, Benjamin Terrier, Stéphane Pelleau, Jason Rosado
BackgroundInfection with SARS-CoV-2 induces an antibody response targeting multiple antigens that changes over time. This complexity presents challenges and opportunities for serological diagnostics.MethodsA multiplex serological assay was developed
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7916fe7255fa4d747a691dcc5666c2dd
https://hal-pasteur.archives-ouvertes.fr/pasteur-02569149v1/document
https://hal-pasteur.archives-ouvertes.fr/pasteur-02569149v1/document