Zobrazeno 1 - 10
of 26
pro vyhledávání: '"Charles Pepe-Ranney"'
Publikováno v:
mBio, Vol 12, Iss 1 (2021)
Our study reveals the ecogenomic traits of microorganisms participating in the cellulose economy of soil. We identified three major categories of participants in this economy: (i) independent primary degraders, (ii) interdependent primary degraders,
Externí odkaz:
https://doaj.org/article/04c3d8e6696b463e8fcbcf4aed025d0d
Autor:
Joan Martí-Carreras, Alejandro Rafael Gener, Sierra D. Miller, Anderson F. Brito, Christiam E. Camacho, Ryan Connor, Ward Deboutte, Cody Glickman, David M. Kristensen, Wynn K. Meyer, Sejal Modha, Alexis L. Norris, Surya Saha, Anna K. Belford, Evan Biederstedt, James Rodney Brister, Jan P. Buchmann, Nicholas P. Cooley, Robert A. Edwards, Kiran Javkar, Michael Muchow, Harihara Subrahmaniam Muralidharan, Charles Pepe-Ranney, Nidhi Shah, Migun Shakya, Michael J. Tisza, Benjamin J. Tully, Bert Vanmechelen, Valerie C. Virta, JL Weissman, Vadim Zalunin, Alexandre Efremov, Ben Busby
Publikováno v:
Viruses, Vol 12, Iss 12, p 1424 (2020)
Viruses represent important test cases for data federation due to their genome size and the rapid increase in sequence data in publicly available databases. However, some consequences of previously decentralized (unfederated) data are lack of consens
Externí odkaz:
https://doaj.org/article/45441b170084430eaf943eb545346079
Publikováno v:
Frontiers in Microbiology, Vol 9 (2018)
Sea stars are among the most important predators in benthic ecosystems worldwide which is partly attributed to their unique gastrointestinal features and feeding behaviors. Despite their ecological importance, the microbiome of these animals and its
Externí odkaz:
https://doaj.org/article/da379329a0f94899871f6115485cb5ee
Publikováno v:
Antibiotics, Vol 7, Iss 1, p 12 (2018)
We have identified Streptomyces sister-taxa which share a recent common ancestor and nearly identical small subunit (SSU) rRNA gene sequences, but inhabit distinct geographic ranges demarcated by latitude and have sufficient genomic divergence to rep
Externí odkaz:
https://doaj.org/article/9c7b6539dcac4dc2b9bd232187bdd870
Autor:
Michael R. Crusoe, Hussien F. Alameldin, Sherine Awad, Elmar Boucher, Adam Caldwell, Reed Cartwright, Amanda Charbonneau, Bede Constantinides, Greg Edvenson, Scott Fay, Jacob Fenton, Thomas Fenzl, Jordan Fish, Leonor Garcia-Gutierrez, Phillip Garland, Jonathan Gluck, Iván González, Sarah Guermond, Jiarong Guo, Aditi Gupta, Joshua R. Herr, Adina Howe, Alex Hyer, Andreas Härpfer, Luiz Irber, Rhys Kidd, David Lin, Justin Lippi, Tamer Mansour, Pamela McA'Nulty, Eric McDonald, Jessica Mizzi, Kevin D. Murray, Joshua R. Nahum, Kaben Nanlohy, Alexander Johan Nederbragt, Humberto Ortiz-Zuazaga, Jeramia Ory, Jason Pell, Charles Pepe-Ranney, Zachary N. Russ, Erich Schwarz, Camille Scott, Josiah Seaman, Scott Sievert, Jared Simpson, Connor T. Skennerton, James Spencer, Ramakrishnan Srinivasan, Daniel Standage, James A. Stapleton, Susan R. Steinman, Joe Stein, Benjamin Taylor, Will Trimble, Heather L. Wiencko, Michael Wright, Brian Wyss, Qingpeng Zhang, en zyme, C. Titus Brown
Publikováno v:
F1000Research, Vol 4 (2015)
The khmer package is a freely available software library for working efficiently with fixed length DNA words, or k-mers. khmer provides implementations of a probabilistic k-mer counting data structure, a compressible De Bruijn graph representation, D
Externí odkaz:
https://doaj.org/article/dc774924b98d40d0bd7efc6c2c5b346c
Publikováno v:
Phytobiomes Journal, Vol 4, Iss 1, Pp 75-89 (2019)
Farmers grow sweetpotatoes worldwide and some sub-Saharan African and Asian diets include sweetpotato as a staple, yet the sweetpotato microbiome is conspicuously less studied relative to crops such as maize, soybean, and wheat. Studying sweetpotato
Publikováno v:
Soil Biology and Biochemistry. 130:150-158
Soils represent one of the largest and most active pools of C in the biosphere, and soil respiration represents a major component of global C flux. Fungi are essential to soil carbon cycling due to their propensity for decomposing organic polymers su
Autor:
Christiam Camacho, Ben Busby, Evan Biederstedt, Benjamin J. Tully, David M. Kristensen, Nicholas P. Cooley, Ward Deboutte, Alexis L. Norris, Sierra D. Miller, Kiran Javkar, Cody Glickman, Alexandre Efremov, Ryan Connor, Anderson F. Brito, Nidhi Shah, Michael Muchow, Alejandro Rafael Gener, Bert Vanmechelen, Michael J. Tisza, Sejal Modha, Vadim Zalunin, Charles Pepe-Ranney, Jan P. Buchmann, Jake L. Weissman, Migun Shakya, Harihara Subrahmaniam Muralidharan, Surya Saha, Robert Edwards, Valerie C. Virta, Joan Martí-Carreras, James Rodney Brister, Wynn K. Meyer, Anna K. Belford
Publikováno v:
Viruses, Vol 12, Iss 1424, p 1424 (2020)
Viruses
Viruses; Volume 12; Issue 12; Pages: 1424
Viruses
Viruses; Volume 12; Issue 12; Pages: 1424
Viruses represent important test cases for data federation due to their genome size and the rapid increase in sequence data in publicly available databases. However, some consequences of previously decentralized (unfederated) data are lack of consens
Background Microorganisms that degrade cellulose utilize extracellular processes that yield free intermediates which promote interactions with non-cellulolytic organisms. We hypothesized that these interactions determine the ecological and physiologi
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::426982d6874d0cfb321d2b81a5299e07
https://doi.org/10.21203/rs.2.23522/v2
https://doi.org/10.21203/rs.2.23522/v2
Publikováno v:
Applied and Environmental Microbiology
Sea star wasting syndrome is a disease primarily observed on the Pacific and Atlantic Coasts of North America that has significantly impacted sea star populations. The etiology of this disease is unknown, although it is hypothesized to be caused by a