Zobrazeno 1 - 10
of 168
pro vyhledávání: '"Charles H. Langley"'
Autor:
Sara Montanari, Luca Bianco, Brian J. Allen, Pedro J. Martínez-García, Nahla V. Bassil, Joseph Postman, Mareike Knäbel, Biff Kitson, Cecilia H. Deng, David Chagné, Marc W. Crepeau, Charles H. Langley, Kate Evans, Amit Dhingra, Michela Troggio, David B. Neale
Publikováno v:
BMC Genomics, Vol 20, Iss 1, Pp 1-18 (2019)
Abstract Background Both a source of diversity and the development of genomic tools, such as reference genomes and molecular markers, are equally important to enable faster progress in plant breeding. Pear (Pyrus spp.) lags far behind other fruit and
Externí odkaz:
https://doaj.org/article/dfa866712e5f4ab7aa2b4b930108d1c8
Autor:
Kristian A. Stevens, Keith Woeste, Sandeep Chakraborty, Marc W. Crepeau, Charles A. Leslie, Pedro J. Martínez-García, Daniela Puiu, Jeanne Romero-Severson, Mark Coggeshall, Abhaya M. Dandekar, Daniel Kluepfel, David B. Neale, Steven L. Salzberg, Charles H. Langley
Publikováno v:
G3: Genes, Genomes, Genetics, Vol 8, Iss 7, Pp 2153-2165 (2018)
Genomic analysis in Juglans (walnuts) is expected to transform the breeding and agricultural production of both nuts and lumber. To that end, we report here the determination of reference sequences for six additional relatives of Juglans regia: Jugla
Externí odkaz:
https://doaj.org/article/d4b79a985c804c28b61e87931bcff716
Autor:
David B. Neale, Patrick E. McGuire, Nicholas C. Wheeler, Kristian A. Stevens, Marc W. Crepeau, Charis Cardeno, Aleksey V. Zimin, Daniela Puiu, Geo M. Pertea, U. Uzay Sezen, Claudio Casola, Tomasz E. Koralewski, Robin Paul, Daniel Gonzalez-Ibeas, Sumaira Zaman, Richard Cronn, Mark Yandell, Carson Holt, Charles H. Langley, James A. Yorke, Steven L. Salzberg, Jill L. Wegrzyn
Publikováno v:
G3: Genes, Genomes, Genetics, Vol 7, Iss 9, Pp 3157-3167 (2017)
A reference genome sequence for Pseudotsuga menziesii var. menziesii (Mirb.) Franco (Coastal Douglas-fir) is reported, thus providing a reference sequence for a third genus of the family Pinaceae. The contiguity and quality of the genome assembly far
Externí odkaz:
https://doaj.org/article/12288f2e698f4ce9b76e4c1e7b3ed00c
Publikováno v:
G3: Genes, Genomes, Genetics, Vol 7, Iss 5, Pp 1563-1568 (2017)
We investigate the utility and scalability of new read cloud technologies to improve the draft genome assemblies of the colossal, and largely repetitive, genomes of conifers. Synthetic long read technologies have existed in various forms as a means o
Externí odkaz:
https://doaj.org/article/efd1c323ff3d4d078a4939bc70141923
Autor:
Daniel Gonzalez-Ibeas, Pedro J. Martinez-Garcia, Randi A. Famula, Annette Delfino-Mix, Kristian A. Stevens, Carol A. Loopstra, Charles H. Langley, David B. Neale, Jill L. Wegrzyn
Publikováno v:
G3: Genes, Genomes, Genetics, Vol 6, Iss 12, Pp 3787-3802 (2016)
Sugar pine (Pinus lambertiana Douglas) is within the subgenus Strobus with an estimated genome size of 31 Gbp. Transcriptomic resources are of particular interest in conifers due to the challenges presented in their megagenomes for gene identificatio
Externí odkaz:
https://doaj.org/article/b47324bcc24747fbb711a9272523f2a7
Autor:
Victoria L. Sork, Sorel T. Fitz-Gibbon, Daniela Puiu, Marc Crepeau, Paul F. Gugger, Rachel Sherman, Kristian Stevens, Charles H. Langley, Matteo Pellegrini, Steven L. Salzberg
Publikováno v:
G3: Genes, Genomes, Genetics, Vol 6, Iss 11, Pp 3485-3495 (2016)
Oak represents a valuable natural resource across Northern Hemisphere ecosystems, attracting a large research community studying its genetics, ecology, conservation, and management. Here we introduce a draft genome assembly of valley oak (Quercus lob
Externí odkaz:
https://doaj.org/article/e736641342ed4419951d41e54c4cdd2b
Publikováno v:
Plant Disease. 106:1639-1644
Sugar pine, Pinus lambertiana Douglas, is a keystone species of montane forests from Baja California to southern Oregon. Like other North American white pines, populations of sugar pine have been greatly reduced by the disease white pine blister rust
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::5b4453c2ca49e23bbe21d26156e59eed
https://doi.org/10.1094/pdis-08-21-1608-re
https://doi.org/10.1094/pdis-08-21-1608-re
Publikováno v:
eLife, Vol 8 (2019)
Despite critical roles in chromosome segregation and disease, the repetitive structure and vast size of centromeres and their surrounding heterochromatic regions impede studies of genomic variation. Here we report the identification of large-scale ha
Externí odkaz:
https://doaj.org/article/b8eb550abe884c05b81e9f66ddecbf70
Autor:
Nicolas Altemose, Glennis A. Logsdon, Andrey V. Bzikadze, Pragya Sidhwani, Sasha A. Langley, Gina V. Caldas, Savannah J. Hoyt, Lev Uralsky, Fedor D. Ryabov, Colin J. Shew, Michael E. G. Sauria, Matthew Borchers, Ariel Gershman, Alla Mikheenko, Valery A. Shepelev, Tatiana Dvorkina, Olga Kunyavskaya, Mitchell R. Vollger, Arang Rhie, Ann M. McCartney, Mobin Asri, Ryan Lorig-Roach, Kishwar Shafin, Julian K. Lucas, Sergey Aganezov, Daniel Olson, Leonardo Gomes de Lima, Tamara Potapova, Gabrielle A. Hartley, Marina Haukness, Peter Kerpedjiev, Fedor Gusev, Kristof Tigyi, Shelise Brooks, Alice Young, Sergey Nurk, Sergey Koren, Sofie R. Salama, Benedict Paten, Evgeny I. Rogaev, Aaron Streets, Gary H. Karpen, Abby F. Dernburg, Beth A. Sullivan, Aaron F. Straight, Travis J. Wheeler, Jennifer L. Gerton, Evan E. Eichler, Adam M. Phillippy, Winston Timp, Megan Y. Dennis, Rachel J. O’Neill, Justin M. Zook, Michael C. Schatz, Pavel A. Pevzner, Mark Diekhans, Charles H. Langley, Ivan A. Alexandrov, Karen H. Miga
Publikováno v:
Science
INTRODUCTION: To faithfully distribute genetic material to daughter cells during cell division, spindle fibers must couple to DNA by means of a structure called the kinetochore, which assembles at each chromosome’s centromere. Human centromeres are
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1d6fdde181caa00d2a2585b6b9de02d9
https://doi.org/10.1101/2021.07.12.452052
https://doi.org/10.1101/2021.07.12.452052
Autor:
Benjamin Wilhite, Marc W. Crepeau, David B. Neale, Daniela Puiu, John Bradley St. Clair, Amanda R. De La Torre, Steven L. Salzberg, Brian J. Allen, Charles H. Langley
Publikováno v:
Genes
Volume 12
Issue 1
Genes, vol 12, iss 1
Genes, Vol 12, Iss 110, p 110 (2021)
Volume 12
Issue 1
Genes, vol 12, iss 1
Genes, Vol 12, Iss 110, p 110 (2021)
Understanding the genomic and environmental basis of cold adaptation is key to understand how plants survive and adapt to different environmental conditions across their natural range. Univariate and multivariate genome-wide association (GWAS) and ge
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0fe92dfae281010d95e60fa032934fb7