Zobrazeno 1 - 10
of 105
pro vyhledávání: '"Chapman, Jarrod A."'
We present Meraculous2, an update to the Meraculous short-read assembler that includes (1) handling of allelic variation using "bubble" structures within the de Bruijn graph, (2) improved gap closing, and (3) an improved scaffolding algorithm that pr
Externí odkaz:
http://arxiv.org/abs/1608.01031
Autor:
Bradnam, Keith R., Fass, Joseph N., Alexandrov, Anton, Baranay, Paul, Bechner, Michael, Birol, İnanç, Boisvert, Sébastien, Chapman, Jarrod A., Chapuis, Guillaume, Chikhi, Rayan, Chitsaz, Hamidreza, Chou, Wen-Chi, Corbeil, Jacques, Del Fabbro, Cristian, Docking, T. Roderick, Durbin, Richard, Earl, Dent, Emrich, Scott, Fedotov, Pavel, Fonseca, Nuno A., Ganapathy, Ganeshkumar, Gibbs, Richard A., Gnerre, Sante, Godzaridis, Élénie, Goldstein, Steve, Haimel, Matthias, Hall, Giles, Haussler, David, Hiatt, Joseph B., Ho, Isaac Y., Howard, Jason, Hunt, Martin, Jackman, Shaun D., Jaffe, David B, Jarvis, Erich, Jiang, Huaiyang, Kazakov, Sergey, Kersey, Paul J., Kitzman, Jacob O., Knight, James R., Koren, Sergey, Lam, Tak-Wah, Lavenier, Dominique, Laviolette, François, Li, Yingrui, Li, Zhenyu, Liu, Binghang, Liu, Yue, Luo, Ruibang, MacCallum, Iain, MacManes, Matthew D, Maillet, Nicolas, Melnikov, Sergey, Vieira, Bruno Miguel, Naquin, Delphine, Ning, Zemin, Otto, Thomas D., Paten, Benedict, Paulo, Octávio S., Phillippy, Adam M., Pina-Martins, Francisco, Place, Michael, Przybylski, Dariusz, Qin, Xiang, Qu, Carson, Ribeiro, Filipe J, Richards, Stephen, Rokhsar, Daniel S., Ruby, J. Graham, Scalabrin, Simone, Schatz, Michael C., Schwartz, David C., Sergushichev, Alexey, Sharpe, Ted, Shaw, Timothy I., Shendure, Jay, Shi, Yujian, Simpson, Jared T., Song, Henry, Tsarev, Fedor, Vezzi, Francesco, Vicedomini, Riccardo, Wang, Jun, Worley, Kim C., Yin, Shuangye, Yiu, Siu-Ming, Yuan, Jianying, Zhang, Guojie, Zhang, Hao, Zhou, Shiguo, Korf, Ian F.
Publikováno v:
GigaScience 2:10 (2013)
Background - The process of generating raw genome sequence data continues to become cheaper, faster, and more accurate. However, assembly of such data into high-quality, finished genome sequences remains challenging. Many genome assembly tools are av
Externí odkaz:
http://arxiv.org/abs/1301.5406
Autor:
Tyler, Brett M., Tripathy, Sucheta, Zhang, Xuemin, Dehal, Paramvir, Aerts, Andrea, Arredondo, Felipe D., Baxter, Laura, Bensasson, Douda, Beynon, Jim L., Chapman, Jarrod, Dorrance, Anne E., Dou, Daolong, Dickerman, Allan W., Dubchak, Inna L., Garbelotto, Matteo, Gijzen, Mark, Gordon, Stuart G., Govers, Francine, Grunwald, Niklaus J., Huang, Wayne, Ivors, Kelly L., Jones, Richard W., Kamoun, Sophien, Krampis, Konstantinos, Lamour, Kurt H., Lee, Mi-Kyung, McDonald, W. Hayes, Medina, Mónica, Nordberg, Eric K., Maclean, Donald J., Ospina-Giraldo, Manuel D., Morris, Paul F., Phuntumart, Vipaporn, Putnam, Nicholas H., Rash, Sam, Sakihama, Yasuko, Salamov, Asaf A., Savidor, Alon, Scheuring, Chantel F., Smith, Brian M., Terry, Astrid, Torto-Alalibo, Trudy A., Win, Joe, Xu, Zhanyou, Zhang, Hongbin, Grigoriev, Igor V., Rokhsar, Daniel S., Boore, Jeffrey L.
Publikováno v:
Science, 2006 Sep 01. 313(5791), 1261-1266.
Externí odkaz:
https://www.jstor.org/stable/3846858
Autor:
Dehal, Paramvir, Satou, Yutaka, Campbell, Robert K., Chapman, Jarrod, Degnan, Bernard, de Tomaso, Anthony, Davidson, Brad, Di Gregorio, Anna, Gelpke, Maarten, Goodstein, David M., Harafuji, Naoe, Ho, Isaac, Hotta, Kohji, Huang, Wayne, Kawashima, Takeshi, Lemaire, Patrick, Martinez, Diego, Meinertzhagen, Ian A., Necula, Simona, Nonaka, Masaru, Putnam, Nik, Rash, Sam, Saiga, Hidetoshi, Satake, Masanobu, Terry, Astrid, Yamada, Lixy, Wang, Hong-Gang, Awazu, Satoko, Azumi, Kaoru, Boore, Jeffrey, Branno, Margherita, Chin-bow, Stephen, DeSantis, Rosaria, Doyle, Sharon, Francino, Pilar, Keys, David N., Haga, Shinobu, Hayashi, Hiroko, Hino, Kyosuke, Imai, Kaoru S., Inaba, Kazuo, Kano, Shungo, Kobayashi, Kenji, Kobayashi, Mari, Lee, Byung-In, Makabe, Kazuhiro W., Manohar, Chitra, Matassi, Giorgio, Medina, Monica, Mochizuki, Yasuaki, Mount, Steve, Morishita, Tomomi, Miura, Sachiko, Nakayama, Akie, Nishizaka, Satoko, Nomoto, Hisayo, Ohta, Fumiko, Oishi, Kazuko, Rigoutsos, Isidore, Sano, Masako, Sasaki, Akane, Sasakura, Yasunori, Shoguchi, Eiichi, Spagnuolo, Antoinetta, Stainier, Didier, Suzuki, Miho M., Tassy, Olivier, Takatori, Naohito, Tokuoka, Miki, Yagi, Kasumi, Yoshizaki, Fumiko, Wada, Shuichi, Zhang, Cindy, Hyatt, P. Douglas, Larimer, Frank, Detter, Chris, Doggett, Norman, Glavina, Tijana, Hawkins, Trevor, Richardson, Paul, Lucas, Susan, Kohara, Yuji, Levine, Michael, Satoh, Nori, Rokhsar, Daniel S.
Publikováno v:
Science, 2002 Dec . 298(5601), 2157-2167.
Externí odkaz:
https://www.jstor.org/stable/3833061
Autor:
Aparicio, Samuel, Chapman, Jarrod, Stupka, Elia, Putnam, Nik, Chia, Jer-ming, Dehal, Paramvir, Christoffels, Alan, Rash, Sam, Hoon, Shawn, Smit, Arian, Roach, Jared, Oh, Tania, Ho, Isaac Y., Wong, Marie, Detter, Chris, Verhoef, Frans, Predki, Paul, Tay, Alice, Lucas, Susan, Richardson, Paul, Smith, Sarah F., Clark, Melody S., Doggett, Norman, Zharkikh, Andrey, Tavtigian, Sean V., Pruss, Dmitry, Barnstead, Mary, Evans, Cheryl, Baden, Holly, Powell, Justin, Glusman, Gustavo, Rowen, Lee, Hood, Leroy, Tan, Y. H., Elgar, Greg, Hawkins, Trevor, Venkatesh, Byrappa, Rokhsar, Daniel, Brenner, Sydney
Publikováno v:
Science, 2002 Aug . 297(5585), 1301-1310.
Externí odkaz:
https://www.jstor.org/stable/3832096
Autor:
Prochnik, Simon E., Umen, James, Nedelcu, Aurora M., Hallmann, Armin, Miller, Stephen M., Nishii, Ichiro, Ferris, Patrick, Kuo, Alan, Mitros, Therese, Fritz-Laylin, Lillian K., Hellsten, Uffe, Chapman, Jarrod, Simakov, Oleg, Rensing, Stefan A., Terry, Astrid, Pangilinan, Jasmyn, Kapitonov, Vladimir, Jurka, Jerzy, Salamov, Asaf, Shapiro, Harris, Schmutz, Jeremy, Grimwood, Jane, Lindquist, Erika, Lucas, Susan, Grigoriev, Igor V., Schmitt, Rüdiger, Kirk, David, Rokhsar, Daniel S.
Publikováno v:
Science, 2010 Jul 01. 329(5988), 223-226.
Externí odkaz:
https://www.jstor.org/stable/40731947
Autor:
Putnam, Nicholas H., Srivastava, Mansi, Hellsten, Uffe, Dirks, Bill, Chapman, Jarrod, Salamov, Asaf, Terry, Astrid, Shapiro, Harris, Lindquist, Erika, Kapitonov, Vladimir V., Jurka, Jerzy, Genikhovich, Grigory, Grigoriev, Igor V., Lucas, Susan M., Steele, Robert E., Finnerty, John R., Technau, Ulrich, Martindale, Mark Q., Rokhsar, Daniel S.
Publikováno v:
Science, 2007 Jul 01. 317(5834), 86-94.
Externí odkaz:
https://www.jstor.org/stable/20036649
Autor:
Degnan Bernard M, Chapman Jarrod, Mohanty Kareshma, Lu Daniel R, Larroux Claire, Srivastava Mansi, Rokhsar Daniel S
Publikováno v:
BMC Biology, Vol 8, Iss 1, p 4 (2010)
Abstract Background LIM homeobox (Lhx) transcription factors are unique to the animal lineage and have patterning roles during embryonic development in flies, nematodes and vertebrates, with a conserved role in specifying neuronal identity. Though ge
Externí odkaz:
https://doaj.org/article/12a3f225ac89460b87f9770746d35e78
Autor:
Chapman, Jarrod A.1 (AUTHOR) jchapman@lbl.gov, Ho, Isaac1 (AUTHOR), Sirisha Sunkara1 (AUTHOR), Shujun Luo2 (AUTHOR), Schroth, Gary P.3 (AUTHOR), Rokhsar, Daniel S.1,3 (AUTHOR)
Publikováno v:
PLoS ONE. 2011, Vol. 6 Issue 8, p1-13. 13p. 2 Diagrams, 3 Charts, 3 Graphs.
Autor:
Chapman, Jarrod A.1, Kirkness, Ewen F.2, Simakov, Oleg3,4, Hampson, Steven E.5, Mitros, Therese4, Weinmaier, Thomas6, Rattei, Thomas6, Balasubramanian, Prakash G.3, Borman, Jon2, Busam, Dana2, Disbennett, Kathryn2, Pfannkoch, Cynthia2, Sumin, Nadezhda2, Sutton, Granger G.2, Viswanathan, Lakshmi Devi2, Walenz, Brian2, Goodstein, David M.1, Hellsten, Uffe1, Kawashima, Takeshi4, Prochnik, Simon E.1
Publikováno v:
Nature. 3/25/2010, Vol. 464 Issue 7288, p592-596. 5p. 2 Diagrams, 1 Graph.