Learning optimal white matter tract representations from tractography using a deep generative model for population analyses

Autor: Brieva, Jorge, Guevara, Pamela, Lepore, Natasha, Linguraru, Marius G., Rittner, Letícia, Romero Castro, Eduardo, Feng, Yixue, Chandio, Bramsh Q., Chattopadhyay, Tamoghna, Thomopoulos, Sophia I., Owens-Walton, Conor, Jahanshad, Neda, Garyfallidis, Eleftherios, Thompson, Paul M.

Publikováno v: Proceedings of SPIE; March 2023, Vol. 12567 Issue: 1 p125670A-125670A-11, 12441342p

Brainhack: Developing a culture of open, inclusive, community-driven neuroscience

Autor: Anousheh, Nasim, Arnatkeviciute, Aurina, Auzias, Guillaume, Bachar, Dipankar, Bannier, Elise, Basanisi, Ruggero, Basavaraj, Arshitha, Bedini, Marco, Bellec, Pierre, Benn, R. Austin, Berluti, Kathryn, Bollmann, Steffen, Bollmann, Saskia, Bradley, Claire, Brown, Jesse, Buchweitz, Augusto, Callahan, Patrick, Chan, Micaela Y., Chandio, Bramsh Q., Cheng, Theresa, Chopra, Sidhant, Chung, Ai Wern, Close, Thomas G., Combrisson, Etienne, Cona, Giorgia, Constable, R. Todd, Cury, Claire, Dadi, Kamalaker, Damasceno, Pablo F., Das, Samir, De Vico Fallani, Fabrizio, DeStasio, Krista, Dickie, Erin W., Dorfschmidt, Lena, Duff, Eugene P., DuPre, Elizabeth, Dziura, Sarah, Esper, Nathalia B., Esteban, Oscar, Fadnavis, Shreyas, Flandin, Guillaume, Flannery, Jessica E., Flournoy, John, Forkel, Stephanie J., Franco, Alexandre R., Ganesan, Saampras, Gao, Siyuan, García Alanis, José C., Garyfallidis, Eleftherios, Glatard, Tristan, Glerean, Enrico, Gonzalez-Castillo, Javier, Gould van Praag, Cassandra D., Greene, Abigail S., Gupta, Geetika, Hahn, Catherine Alice, Halchenko, Yaroslav O., Handwerker, Daniel, Hartmann, Thomas S., Hayot-Sasson, Valérie, Heunis, Stephan, Hoffstaedter, Felix, Hohmann, Daniela M., Horien, Corey, Ioanas, Horea-Ioan, Iordan, Alexandru, Jiang, Chao, Joseph, Michael, Kai, Jason, Karakuzu, Agah, Kennedy, David N., Keshavan, Anisha, Khan, Ali R., Kiar, Gregory, Klink, P. Christiaan, Koppelmans, Vincent, Koudoro, Serge, Laird, Angela R., Langs, Georg, Laws, Marissa, Licandro, Roxane, Liew, Sook-Lei, Lipic, Tomislav, Litinas, Krisanne, Lurie, Daniel J., Lussier, Désirée, Madan, Christopher R., Mais, Lea-Theresa, Mansour L, Sina, Manzano-Patron, J.P., Maoutsa, Dimitra, Marcon, Matheus, Margulies, Daniel S., Marinato, Giorgio, Marinazzo, Daniele, Markiewicz, Christopher J., Maumet, Camille, Meneguzzi, Felipe, Meunier, David, Milham, Michael P., Mills, Kathryn L., Momi, Davide, Moreau, Clara A., Motala, Aysha, Moxon-Emre, Iska, Nichols, Thomas E., Nielson, Dylan M., Nilsonne, Gustav, Novello, Lisa, O’Brien, Caroline, Olafson, Emily, Oliver, Lindsay D., Onofrey, John A., Orchard, Edwina R., Oudyk, Kendra, Park, Patrick J., Parsapoor, Mahboobeh, Pasquini, Lorenzo, Peltier, Scott, Pernet, Cyril R., Pienaar, Rudolph, Pinheiro-Chagas, Pedro, Poline, Jean-Baptiste, Qiu, Anqi, Quendera, Tiago, Rice, Laura C., Rocha-Hidalgo, Joscelin, Rutherford, Saige, Scharinger, Mathias, Scheinost, Dustin, Shariq, Deena, Shaw, Thomas B., Siless, Viviana, Simmonite, Molly, Sirmpilatze, Nikoloz, Spence, Hayli, Sprenger, Julia, Stajduhar, Andrija, Szinte, Martin, Takerkart, Sylvain, Tam, Angela, Tejavibulya, Link, Thiebaut de Schotten, Michel, Thome, Ina, Tomaz da Silva, Laura, Traut, Nicolas, Uddin, Lucina Q., Vallesi, Antonino, VanMeter, John W., Vijayakumar, Nandita, di Oleggio Castello, Matteo Visconti, Vohryzek, Jakub, Vukojević, Jakša, Whitaker, Kirstie Jane, Whitmore, Lucy, Wideman, Steve, Witt, Suzanne T., Xie, Hua, Xu, Ting, Yan, Chao-Gan, Yeh, Fang-Cheng, Yeo, B.T. Thomas, Zuo, Xi-Nian, Gau, Rémi, Noble, Stephanie, Heuer, Katja, Bottenhorn, Katherine L., Bilgin, Isil P., Yang, Yu-Fang, Huntenburg, Julia M., Bayer, Johanna M.M., Bethlehem, Richard A.I., Rhoads, Shawn A., Vogelbacher, Christoph, Borghesani, Valentina, Levitis, Elizabeth, Wang, Hao-Ting, Van Den Bossche, Sofie, Kobeleva, Xenia, Legarreta, Jon Haitz, Guay, Samuel, Atay, Selim Melvin, Varoquaux, Gael P., Huijser, Dorien C., Sandström, Malin S., Herholz, Peer, Nastase, Samuel A., Badhwar, AmanPreet, Dumas, Guillaume, Schwab, Simon, Moia, Stefano, Dayan, Michael, Bassil, Yasmine, Brooks, Paula P., Mancini, Matteo, Shine, James M., O’Connor, David, Xie, Xihe, Poggiali, Davide, Friedrich, Patrick, Heinsfeld, Anibal S., Riedl, Lydia, Toro, Roberto, Caballero-Gaudes, César, Eklund, Anders, Garner, Kelly G., Nolan, Christopher R., Demeter, Damion V., Barrios, Fernando A., Merchant, Junaid S., McDevitt, Elizabeth A., Oostenveld, Robert, Craddock, R. Cameron, Rokem, Ariel, Doyle, Andrew, Ghosh, Satrajit S., Nikolaidis, Aki, Stanley, Olivia W., Uruñuela, Eneko

Publikováno v: In Neuron 2 June 2021 109(11):1769-1775

Learning Streamline Embeddings with Variational Autoencoder for Intersubject Bundle Comparison in Alzheimer's Disease.

Autor: Feng, Yixue, Chandio, Bramsh Q, Chattopadhyay, Tamoghna, Thomopoulos, Sophia I, Owens‐Walton, Conor, Garyfallidis, Eleftherios, Jahanshad, Neda, Thompson, Paul M

Publikováno v: Alzheimer's & Dementia: The Journal of the Alzheimer's Association; Dec2022 Supplement 5, Vol. 18 Issue 5, p1-2, 2p

Microstructural mapping of neural pathways in Alzheimer's disease using macrostructure-informed normative tractometry.

Autor: Feng Y; Imaging Genetics Center, Mark and Mary Stevens Neuroimaging and Informatics Institute, Keck School of Medicine, University of Southern California, Marina del Rey, California, USA., Chandio BQ; Imaging Genetics Center, Mark and Mary Stevens Neuroimaging and Informatics Institute, Keck School of Medicine, University of Southern California, Marina del Rey, California, USA., Villalon-Reina JE; Imaging Genetics Center, Mark and Mary Stevens Neuroimaging and Informatics Institute, Keck School of Medicine, University of Southern California, Marina del Rey, California, USA., Thomopoulos SI; Imaging Genetics Center, Mark and Mary Stevens Neuroimaging and Informatics Institute, Keck School of Medicine, University of Southern California, Marina del Rey, California, USA., Nir TM; Imaging Genetics Center, Mark and Mary Stevens Neuroimaging and Informatics Institute, Keck School of Medicine, University of Southern California, Marina del Rey, California, USA., Benavidez S; Imaging Genetics Center, Mark and Mary Stevens Neuroimaging and Informatics Institute, Keck School of Medicine, University of Southern California, Marina del Rey, California, USA., Laltoo E; Imaging Genetics Center, Mark and Mary Stevens Neuroimaging and Informatics Institute, Keck School of Medicine, University of Southern California, Marina del Rey, California, USA., Chattopadhyay T; Imaging Genetics Center, Mark and Mary Stevens Neuroimaging and Informatics Institute, Keck School of Medicine, University of Southern California, Marina del Rey, California, USA., Joshi H; Multimodal Brain Image Analysis Laboratory, National Institute of Mental Health and Neuro Sciences (NIMHANS), Bangalore, India., Venkatasubramanian G; Translational Psychiatry Laboratory, National Institute of Mental Health and Neuro Sciences (NIMHANS), Bangalore, India., John JP; Multimodal Brain Image Analysis Laboratory, National Institute of Mental Health and Neuro Sciences (NIMHANS), Bangalore, India., Jahanshad N; Imaging Genetics Center, Mark and Mary Stevens Neuroimaging and Informatics Institute, Keck School of Medicine, University of Southern California, Marina del Rey, California, USA., Reid RI; Department of Information Technology, Mayo Clinic and Foundation, Rochester, Minnesota, USA.; Department of Radiology, Mayo Clinic and Foundation, Rochester, Minnesota, USA., Jack CR; Department of Radiology, Mayo Clinic and Foundation, Rochester, Minnesota, USA., Weiner MW; Department of Radiology and Biomedical Imaging, UCSF School of Medicine, San Francisco, California, USA., Thompson PM; Imaging Genetics Center, Mark and Mary Stevens Neuroimaging and Informatics Institute, Keck School of Medicine, University of Southern California, Marina del Rey, California, USA.

Publikováno v: Alzheimer's & dementia : the journal of the Alzheimer's Association [Alzheimers Dement] 2024 Dec 30. Date of Electronic Publication: 2024 Dec 30.

Deep Normative Tractometry for Identifying Joint White Matter Macro- and Micro-structural Abnormalities in Alzheimer's Disease.

Autor: Feng Y; Imaging Genetics Center, Mark and Mary Stevens Neuroimaging and Informatics Institute, Keck School of Medicine, University of Southern California, Marina del Rey, CA, United States., Chandio BQ; Imaging Genetics Center, Mark and Mary Stevens Neuroimaging and Informatics Institute, Keck School of Medicine, University of Southern California, Marina del Rey, CA, United States., Villalon-Reina JE; Imaging Genetics Center, Mark and Mary Stevens Neuroimaging and Informatics Institute, Keck School of Medicine, University of Southern California, Marina del Rey, CA, United States., Benavidez S; Imaging Genetics Center, Mark and Mary Stevens Neuroimaging and Informatics Institute, Keck School of Medicine, University of Southern California, Marina del Rey, CA, United States., Chattopadhyay T; Imaging Genetics Center, Mark and Mary Stevens Neuroimaging and Informatics Institute, Keck School of Medicine, University of Southern California, Marina del Rey, CA, United States., Chehrzadeh S; Imaging Genetics Center, Mark and Mary Stevens Neuroimaging and Informatics Institute, Keck School of Medicine, University of Southern California, Marina del Rey, CA, United States., Laltoo E; Imaging Genetics Center, Mark and Mary Stevens Neuroimaging and Informatics Institute, Keck School of Medicine, University of Southern California, Marina del Rey, CA, United States., Thomopoulos SI; Imaging Genetics Center, Mark and Mary Stevens Neuroimaging and Informatics Institute, Keck School of Medicine, University of Southern California, Marina del Rey, CA, United States., Joshi H; Multimodal Brain Image Analysis Laboratory, Translational Psychiatry Laboratory, National Institute of Mental Health and Neuro Sciences (NIMHANS), Bengaluru, Karnataka, India., Venkatasubramanian G; Multimodal Brain Image Analysis Laboratory, Translational Psychiatry Laboratory, National Institute of Mental Health and Neuro Sciences (NIMHANS), Bengaluru, Karnataka, India., John JP; Multimodal Brain Image Analysis Laboratory, Translational Psychiatry Laboratory, National Institute of Mental Health and Neuro Sciences (NIMHANS), Bengaluru, Karnataka, India., Jahanshad N; Imaging Genetics Center, Mark and Mary Stevens Neuroimaging and Informatics Institute, Keck School of Medicine, University of Southern California, Marina del Rey, CA, United States., Thompson PM; Imaging Genetics Center, Mark and Mary Stevens Neuroimaging and Informatics Institute, Keck School of Medicine, University of Southern California, Marina del Rey, CA, United States.

Publikováno v: BioRxiv : the preprint server for biology [bioRxiv] 2024 Feb 06. Date of Electronic Publication: 2024 Feb 06.