Zobrazeno 1 - 10
of 132
pro vyhledávání: '"Chakraborty, Debayan"'
The well known phenomenon of phase separation in synthetic polymers and proteins has become a major topic in biophysics because it has been invoked as a mechanism of compartment formation in cells, without the need for membranes. Most of the coacerva
Externí odkaz:
http://arxiv.org/abs/2303.04215
Publikováno v:
In: Nguyen, H., Snasel, V. (eds) Computational Social Networks. CSoNet 2016. Lecture Notes in Computer Science(), vol 9795. Springer, Cham
Understanding how the network topology affects the spread of an epidemic is a main concern in order to develop efficient immunization strategies. While there is a great deal of work dealing with the macroscopic topological properties of the networks,
Externí odkaz:
http://arxiv.org/abs/2212.14884
The beautiful structures of single and multi-domain proteins are clearly ordered in some fashion but cannot be readily classified using group theory methods that are successfully used to describe periodic crystals. For this reason, protein structures
Externí odkaz:
http://arxiv.org/abs/2103.00122
Random polyampholytes (PAs) contain positively and negatively charged monomers that are distributed randomly along the polymer chain. The interaction between charges is assumed to be given by the Debye-Huckel potential. We show that the size of the P
Externí odkaz:
http://arxiv.org/abs/1804.05609
We develop a robust coarse-grained model for single and double stranded DNA by representing each nucleotide by three interaction sites (TIS) located at the centers of mass of sugar, phosphate, and base. The resulting TIS model includes base-stacking,
Externí odkaz:
http://arxiv.org/abs/1802.01612
Publikováno v:
Proceedings of the National Academy of Sciences of the United States of America, 2020 Aug . 117(33), 19926-19937.
Externí odkaz:
https://www.jstor.org/stable/26968589
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Akademický článek
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Publikováno v:
In Journal of Colloid And Interface Science 15 March 2019 539:414-424
Autor:
Romano, Flavio, Chakraborty, Debayan, Doye, Jonathan P. K., Ouldridge, Thomas E., Louis, Ard. A.
Publikováno v:
J. Chem. Phys. 138, 085101 (2013)
We use a recently developed coarse-grained model to simulate the overstretching of duplex DNA. Overstretching at 23C occurs at 74 pN in the model, about 6-7 pN higher than the experimental value at equivalent salt conditions. Furthermore, the model r
Externí odkaz:
http://arxiv.org/abs/1209.5892