Zobrazeno 1 - 9
of 9
pro vyhledávání: '"Ch. Julián Villabona-Arenas"'
Autor:
Benjamin B. Lindsey, Ch. Julián Villabona-Arenas, Finlay Campbell, Alexander J. Keeley, Matthew D. Parker, Dhruv R. Shah, Helena Parsons, Peijun Zhang, Nishchay Kakkar, Marta Gallis, Benjamin H. Foulkes, Paige Wolverson, Stavroula F. Louka, Stella Christou, Amy State, Katie Johnson, Mohammad Raza, Sharon Hsu, Thibaut Jombart, Anne Cori, Sheffield COVID-19 Genomics Group, The COVID-19 Genomics UK (COG-UK) consortium, CMMID COVID-19 working group, Cariad M. Evans, David G. Partridge, Katherine E. Atkins, Stéphane Hué, Thushan I. de Silva
Publikováno v:
Nature Communications, Vol 13, Iss 1, Pp 1-11 (2022)
SARS-CoV-2 has resulted in multiple outbreaks in hospitals, but identifying transmission events is challenging. Here, the authors combine whole genome sequencing and epidemiological data from the first two waves of the pandemic at a UK hospital trust
Externí odkaz:
https://doaj.org/article/2dc9161dd8094c0da7b84175de90cfd4
Autor:
Benjamin B. Lindsey, Ch. Julián Villabona-Arenas, Finlay Campbell, Alexander J. Keeley, Matthew D. Parker, Dhruv R. Shah, Helena Parsons, Peijun Zhang, Nishchay Kakkar, Marta Gallis, Benjamin H. Foulkes, Paige Wolverson, Stavroula F. Louka, Stella Christou, Amy State, Katie Johnson, Mohammad Raza, Sharon Hsu, Thibaut Jombart, Anne Cori, Sheffield COVID-19 Genomics Group, The COVID-19 Genomics UK (COG-UK) consortium, CMMID COVID-19 working group, Cariad M. Evans, David G. Partridge, Katherine E. Atkins, Stéphane Hué, Thushan I. de Silva
Publikováno v:
Nature Communications, Vol 13, Iss 1, Pp 1-1 (2022)
Externí odkaz:
https://doaj.org/article/d4bec462b319451e874531570de9f9bf
Autor:
Katherine E. Atkins, Mohammad Raza, Finlay Campbell, Thushan I de Silva, Stella Christou, Amy State, Marta Gallis, Nishchay Kakkar, Dhruv R. Shah, Peijun Zhang, Benjamin H Foulkes, Katie Johnson, H.K. Parsons, Sharon Hsu, Thibaut Jombart, Matthew Parker, Stavroula F Louka, Benjamin B Lindsey, Cariad Evans, David G Partridge, Stéphane Hué, Paige Wolverson, Ch. Julián Villabona-Arenas, Alexander J Keeley, Anne Cori
Structured abstractObjectivesTo characterise within-hospital SARS-CoV-2 transmission across two waves of the COVID-19 pandemic.DesignA retrospective Bayesian modelling study to reconstruct transmission chains amongst 2181 patients and healthcare work
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::5f5e26d1ac829cd5c38bec6af97ccb23
https://doi.org/10.1101/2021.07.15.21260537
https://doi.org/10.1101/2021.07.15.21260537
Autor:
Stéphane Hué, Ting Shi, Andrew J. Leigh Brown, Sarah Langhorne, Damien C. Tully, Ch. Julián Villabona-Arenas, Jan Albert, James Baxter, Katherine E. Atkins
SummaryBackgroundHIV-1 infections initiated by multiple founder variants are characterised by a higher viral load and a worse clinical prognosis, yet little is known about the routes of exposure through which transmission of multiple founder variants
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::95d3ebe956ef7fe5964e762cd0781234
https://doi.org/10.1101/2021.07.14.21259809
https://doi.org/10.1101/2021.07.14.21259809
Autor:
Katrina A. Lythgoe, John S. Bradley, Stéphane Hué, Katherine E. Atkins, J Baxter, Ch. Julián Villabona-Arenas, Matthew Hall
Inferring the transmission direction between linked individuals living with HIV provides unparalleled power to understand the epidemiology that determines transmission. Phylogenetic ancestral state reconstruction approaches infer the transmission dir
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::f20693278d199a0059241d12ed471900
https://doi.org/10.1101/2021.05.12.21256968
https://doi.org/10.1101/2021.05.12.21256968
Publikováno v:
Nat Microbiol
NATURE MICROBIOLOGY
NATURE MICROBIOLOGY
How viruses are related, and how they have evolved and spread over time, can be investigated using phylogenetics. Here, we set out how genomic analyses should be used during an epidemic and propose that phylogenetic insights from the early stages of
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8f3d219c2e7c83fd12072e268db0a6d5
https://europepmc.org/articles/PMC8168400/
https://europepmc.org/articles/PMC8168400/
Autor:
Stéphane Hué, Harry H.X. Wang, Billy J Quilty, Katherine E. Atkins, Kanyin L Ong, Arminder K Deol, Nikos I Bosse, Sebastian Funk, Emily Nightingale, Kathleen M. O’Reilly, Petra Klepac, Kevin van Zandvoort, Graham F. Medley, Nicholas G Davies, Andrew Clark, Akira Endo, Alicia Rosello, Mark Jit, James D Munday, Hamish Gibbs, Simon R Procter, Kiesha Prem, Martin McKee, Sarah Joseph, Gwen Knight, Charlie Diamond, Yang Liu, Jon C Emery, Amy Gimma, Eleanor M Rees, Stewart W Mercer, Ch. Julián Villabona-Arenas, Rein M G J Houben, Christopher I Jarvis, W. John Edmunds, Sam Abbott, Adam J. Kucharski, Carl A. B. Pearson, Francesco Checchi, Stefan Flasche, Thibaut Jombart, Amitava Banerjee, Quentin J Leclerc, Pablo Perel, Charlotte Warren-Gash, Christopher Troeger, Timothy W Russell, Joel Hellewell, Rosalind M Eggo, Fiona Yueqian Sun, Damien C. Tully, Samuel Clifford, Colin Sanderson, Megan Auzenbergs, Bruce Guthrie
Publikováno v:
The Lancet. Global Health
The Lancet Global Health
Clark, A, Jit, M, Warren-Gash, C, Guthrie, B, Wang, H HX, Mercer, S, Sanderson, C, McKee, M, Troeger, C, Ong, K I, Checchi, F, Perel, P, Gibbs, H P, Banerjee, A & Eggo, R M 2020, ' Global, regional, and national estimates of the population at increased risk of severe COVID-19 due to underlying health conditions in 2020: a modelling study ', The Lancet . https://doi.org/10.1016/S2214-109X(20)30264-3
The Lancet Global Health, Vol 8, Iss 8, Pp e1003-e1017 (2020)
The Lancet Global Health
Clark, A, Jit, M, Warren-Gash, C, Guthrie, B, Wang, H HX, Mercer, S, Sanderson, C, McKee, M, Troeger, C, Ong, K I, Checchi, F, Perel, P, Gibbs, H P, Banerjee, A & Eggo, R M 2020, ' Global, regional, and national estimates of the population at increased risk of severe COVID-19 due to underlying health conditions in 2020: a modelling study ', The Lancet . https://doi.org/10.1016/S2214-109X(20)30264-3
The Lancet Global Health, Vol 8, Iss 8, Pp e1003-e1017 (2020)
Background: \ud The risk of severe COVID-19 if an individual becomes infected is known to be higher in older individuals and those with underlying health conditions. Understanding the number of individuals at increased risk of severe COVID-19 and how
Autor:
Katherine E. Atkins, Stephen G. Gaffney, Stéphane Hué, Matthew Hall, Katrina A. Lythgoe, Ch. Julián Villabona-Arenas, Roland R. Regoes
Publikováno v:
Science
Villabona-arenas, C J, Hall, M, Lythgoe, K A, Gaffney, S G, Regoes, R R, Hué, S & Atkins, K E 2020, ' Number of HIV-1 founder variants is determined by the recency of the source partner infection ', Science, vol. 369, no. 6499, pp. 103-108 . https://doi.org/10.1126/science.aba5443
Villabona-arenas, C J, Hall, M, Lythgoe, K A, Gaffney, S G, Regoes, R R, Hué, S & Atkins, K E 2020, ' Number of HIV-1 founder variants is determined by the recency of the source partner infection ', Science, vol. 369, no. 6499, pp. 103-108 . https://doi.org/10.1126/science.aba5443
Sourcing HIV-1 infection HIV-1 has a multitude of strain variants, but sexual transmission of HIV-1 is assumed to result from productive infection by only one virus particle. Knowing the genetics of the virus strains that are transmitted could be cru
Autor:
Cinthy Jimenez-Silva, Ricardo Rivero, Jordan Douglas, Remco Bouckaert, Ch. Julian Villabona-Arenas, Katherine E. Atkins, Bertha Gastelbondo, Alfonso Calderon, Camilo Guzman, Daniel Echeverri-De la Hoz, Marina Muñoz, Nathalia Ballesteros, Sergio Castañeda, Luz H. Patiño, Angie Ramirez, Nicolas Luna, Alberto Paniz-Mondolfi, Hector Serrano-Coll, Juan David Ramirez, Salim Mattar, Alexei J. Drummond
Publikováno v:
Communications Medicine, Vol 3, Iss 1, Pp 1-12 (2023)
Abstract Background The emergence of highly transmissible SARS-CoV-2 variants has led to surges in cases and the need for global genomic surveillance. While some variants rapidly spread worldwide, other variants only persist nationally. There is a ne
Externí odkaz:
https://doaj.org/article/bd3069eda8904cd6af737fdc3a9ba9cc