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Akademický článek

Fasting shapes chromatin architecture through an mTOR/RNA Pol I axis.

Autor: Al-Refaie N; Institute of Functional Epigenetics, Helmholtz Zentrum München, Neuherberg, Germany.; Faculty of Medicine, Ludwig-Maximilians Universität München, Munich, Germany., Padovani F; Institute of Functional Epigenetics, Helmholtz Zentrum München, Neuherberg, Germany., Hornung J; Institute of Functional Epigenetics, Helmholtz Zentrum München, Neuherberg, Germany., Pudelko L; Institute of Functional Epigenetics, Helmholtz Zentrum München, Neuherberg, Germany.; Faculty of Medicine, Ludwig-Maximilians Universität München, Munich, Germany., Binando F; Institute of Functional Epigenetics, Helmholtz Zentrum München, Neuherberg, Germany.; Institute of Medical Sciences, University of Aberdeen, Aberdeen, UK., Del Carmen Fabregat A; Centre for Genomic Regulation, The Barcelona Institute of Science and Technology, Barcelona, Spain.; Universitat Pompeu Fabra, Barcelona, Spain., Zhao Q; Department of Molecular Biosciences, University of Texas Austin, Austin, TX, USA., Towbin BD; University of Bern, Bern, Switzerland., Cenik ES; Department of Molecular Biosciences, University of Texas Austin, Austin, TX, USA., Stroustrup N; Centre for Genomic Regulation, The Barcelona Institute of Science and Technology, Barcelona, Spain.; Universitat Pompeu Fabra, Barcelona, Spain., Padeken J; Institute of Molecular Biology, Mainz, Germany., Schmoller KM; Institute of Functional Epigenetics, Helmholtz Zentrum München, Neuherberg, Germany., Cabianca DS; Institute of Functional Epigenetics, Helmholtz Zentrum München, Neuherberg, Germany. daphne.cabianca@helmholtz-munich.de.

Publikováno v: Nature cell biology [Nat Cell Biol] 2024 Nov; Vol. 26 (11), pp. 1903-1917. Date of Electronic Publication: 2024 Sep 19.

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Akademický článek

Translation efficiency covariation across cell types is a conserved organizing principle of mammalian transcriptomes.

Autor: Liu Y; Department of Molecular Biosciences, University of Texas at Austin, Austin, TX 78712, USA., Hoskins I; Department of Molecular Biosciences, University of Texas at Austin, Austin, TX 78712, USA., Geng M; Department of Molecular Biosciences, University of Texas at Austin, Austin, TX 78712, USA., Zhao Q; Department of Molecular Biosciences, University of Texas at Austin, Austin, TX 78712, USA., Chacko J; Department of Molecular Biosciences, University of Texas at Austin, Austin, TX 78712, USA., Qi K; Department of Molecular Biosciences, University of Texas at Austin, Austin, TX 78712, USA., Persyn L; Department of Molecular Biosciences, University of Texas at Austin, Austin, TX 78712, USA., Wang J; mRNA Center of Excellence, Sanofi, Waltham, MA 02451, USA., Zheng D; mRNA Center of Excellence, Sanofi, Waltham, MA 02451, USA., Zhong Y; Department of Molecular Biosciences, University of Texas at Austin, Austin, TX 78712, USA., Rao S; Department of Molecular Biosciences, University of Texas at Austin, Austin, TX 78712, USA., Park D; Department of Molecular Biosciences, University of Texas at Austin, Austin, TX 78712, USA., Cenik ES; Department of Molecular Biosciences, University of Texas at Austin, Austin, TX 78712, USA., Agarwal V; mRNA Center of Excellence, Sanofi, Waltham, MA 02451, USA., Ozadam H; Department of Molecular Biosciences, University of Texas at Austin, Austin, TX 78712, USA.; Present address: Sail Biomedicines, Cambridge, MA, 02141, USA., Cenik C; Department of Molecular Biosciences, University of Texas at Austin, Austin, TX 78712, USA.; mRNA Center of Excellence, Sanofi, Waltham, MA 02451, USA.; Present address: Sail Biomedicines, Cambridge, MA, 02141, USA.

Publikováno v: BioRxiv : the preprint server for biology [bioRxiv] 2024 Aug 11. Date of Electronic Publication: 2024 Aug 11.

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Cytosolic Ribosomal Protein Haploinsufficiency affects Mitochondrial Morphology and Respiration.

Autor: Surya A; Department of Molecular Biosciences, University of Texas at Austin, Austin, TX 78712, USA., Bolton BM; Department of Molecular Biosciences, University of Texas at Austin, Austin, TX 78712, USA., Rothe R; Department of Molecular Biosciences, University of Texas at Austin, Austin, TX 78712, USA., Mejia-Trujillo R; Department of Molecular Biosciences, University of Texas at Austin, Austin, TX 78712, USA., Zhao Q; Department of Molecular Biosciences, University of Texas at Austin, Austin, TX 78712, USA., Leonita A; Department of Molecular Biosciences, University of Texas at Austin, Austin, TX 78712, USA., Liu Y; Department of Molecular Biosciences, University of Texas at Austin, Austin, TX 78712, USA., Rangan R; Department of Molecular Biosciences, University of Texas at Austin, Austin, TX 78712, USA., Gorusu Y; Department of Molecular Biosciences, University of Texas at Austin, Austin, TX 78712, USA., Nguyen P; Department of Molecular Biosciences, University of Texas at Austin, Austin, TX 78712, USA., Cenik C; Department of Molecular Biosciences, University of Texas at Austin, Austin, TX 78712, USA., Cenik ES; Department of Molecular Biosciences, University of Texas at Austin, Austin, TX 78712, USA.

Publikováno v: BioRxiv : the preprint server for biology [bioRxiv] 2024 May 02. Date of Electronic Publication: 2024 May 02.

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Akademický článek

Ribosome biogenesis disruption mediated chromatin structure changes revealed by SRAtac, a customizable end to end analysis pipeline for ATAC-seq.

Autor: Freeman TF; Department of Molecular Biosciences, University of Texas, Austin, TX, 78712, USA., Zhao Q; Department of Molecular Biosciences, University of Texas, Austin, TX, 78712, USA., Surya A; Department of Molecular Biosciences, University of Texas, Austin, TX, 78712, USA., Rothe R; Department of Molecular Biosciences, University of Texas, Austin, TX, 78712, USA., Cenik ES; Department of Molecular Biosciences, University of Texas, Austin, TX, 78712, USA. esarinay@utexas.edu.

Publikováno v: BMC genomics [BMC Genomics] 2023 Sep 01; Vol. 24 (1), pp. 512. Date of Electronic Publication: 2023 Sep 01.

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An mTOR/RNA pol I axis shapes chromatin architecture in response to fasting.

Autor: Al-Refaie N, Padovani F, Binando F, Hornung J, Zhao Q, Towbin BD, Cenik ES, Stroustrup N, Schmoller KM, Cabianca DS

Publikováno v: BioRxiv : the preprint server for biology [bioRxiv] 2023 Jul 22. Date of Electronic Publication: 2023 Jul 22.

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Akademický článek

Loss of coordinated expression between ribosomal and mitochondrial genes revealed by comprehensive characterization of a large family with a rare Mendelian disorder.

Autor: Panici B; Department of Molecular Biosciences, University of Texas at Austin, Austin, USA. Electronic address: Brendan.Panici@bcm.edu., Nakajima H; Department of Molecular Biosciences, University of Texas at Austin, Austin, USA., Carlston CM; University of Utah Health, Salt Lake City, UT, USA., Ozadam H; Department of Molecular Biosciences, University of Texas at Austin, Austin, USA. Electronic address: hakan.ozadam@utexas.edu., Cenik C; Department of Molecular Biosciences, University of Texas at Austin, Austin, USA. Electronic address: ccenik@austin.utexas.edu., Cenik ES; Department of Molecular Biosciences, University of Texas at Austin, Austin, USA. Electronic address: esarinay@utexas.edu.

Publikováno v: Genomics [Genomics] 2021 Jul; Vol. 113 (4), pp. 1895-1905. Date of Electronic Publication: 2021 Apr 20.

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Genes with 5' terminal oligopyrimidine tracts preferentially escape global suppression of translation by the SARS-CoV-2 Nsp1 protein.

Autor: Rao S; Department of Molecular Biosciences, University of Texas at Austin, Austin, TX 78712, USA., Hoskins I; Department of Molecular Biosciences, University of Texas at Austin, Austin, TX 78712, USA., Tonn T; Department of Molecular Biosciences, University of Texas at Austin, Austin, TX 78712, USA., Garcia PD; Department of Molecular Biosciences, University of Texas at Austin, Austin, TX 78712, USA., Ozadam H; Department of Molecular Biosciences, University of Texas at Austin, Austin, TX 78712, USA., Cenik ES; Department of Molecular Biosciences, University of Texas at Austin, Austin, TX 78712, USA., Cenik C; Department of Molecular Biosciences, University of Texas at Austin, Austin, TX 78712, USA.

Publikováno v: BioRxiv : the preprint server for biology [bioRxiv] 2021 May 25. Date of Electronic Publication: 2021 May 25.

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Akademický článek

Functional and structural basis of extreme conservation in vertebrate 5' untranslated regions.

Autor: Byeon GW; Department of Genetics, Stanford University School of Medicine, Stanford, CA, USA.; Department of Developmental Biology, Stanford University School of Medicine, Stanford, CA, USA., Cenik ES; Department of Genetics, Stanford University School of Medicine, Stanford, CA, USA.; Department of Developmental Biology, Stanford University School of Medicine, Stanford, CA, USA.; Department of Molecular Biosciences, University of Texas Austin, Austin, TX, USA., Jiang L; Department of Genetics, Stanford University School of Medicine, Stanford, CA, USA., Tang H; Department of Genetics, Stanford University School of Medicine, Stanford, CA, USA., Das R; Department of Biochemistry, Stanford University School of Medicine, Stanford, CA, USA., Barna M; Department of Genetics, Stanford University School of Medicine, Stanford, CA, USA. mbarna@stanford.edu.; Department of Developmental Biology, Stanford University School of Medicine, Stanford, CA, USA. mbarna@stanford.edu.

Publikováno v: Nature genetics [Nat Genet] 2021 May; Vol. 53 (5), pp. 729-741. Date of Electronic Publication: 2021 Apr 05.

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Akademický článek

Maternal Ribosomes Are Sufficient for Tissue Diversification during Embryonic Development in C. elegans.

Autor: Cenik ES; Department of Pathology, Stanford University Medical School, Stanford, CA, USA; Department of Molecular Biosciences, University of Texas Austin, Austin, TX, USA., Meng X; Department of Cellular and Molecular Medicine, School of Medicine, University of California, San Diego, San Diego, CA, USA., Tang NH; Department of Cellular and Molecular Medicine, School of Medicine, University of California, San Diego, San Diego, CA, USA., Hall RN; Department of Bioengineering, Stanford University, Stanford, CA, USA., Arribere JA; Department of MCD Biology, University of California, Santa Cruz, Santa Cruz, CA, USA., Cenik C; Department of Molecular Biosciences, University of Texas Austin, Austin, TX, USA., Jin Y; Department of Cellular and Molecular Medicine, School of Medicine, University of California, San Diego, San Diego, CA, USA., Fire A; Department of Pathology, Stanford University Medical School, Stanford, CA, USA. Electronic address: afire@stanford.edu.

Publikováno v: Developmental cell [Dev Cell] 2019 Mar 25; Vol. 48 (6), pp. 811-826.e6. Date of Electronic Publication: 2019 Feb 21.

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