Zobrazeno 1 - 10
of 14
pro vyhledávání: '"Cedric Arisdakessian"'
Publikováno v:
G3: Genes, Genomes, Genetics, Vol 10, Iss 5, Pp 1775-1783 (2020)
Alignment of scRNA-Seq data are the first and one of the most critical steps of the scRNA-Seq analysis workflow, and thus the choice of proper aligners is of paramount importance. Recently, STAR an alignment method and Kallisto a pseudoalignment meth
Externí odkaz:
https://doaj.org/article/f018ae07efd84d36b03dfb99c799f170
Publikováno v:
ACM SIGAPP Applied Computing Review. 22:15-23
Data from sequencing instruments are produced at such rates that their analysis is becoming increasingly computationally challenging. Although DNA sequence clustering of very large datasets is an important computational step in various bioinformatics
Publikováno v:
Practice and Experience in Advanced Research Computing.
Autor:
Jessie Bushell, Roland A. Knapp, Andrea J. Jani, Daniel M. Boiano, Cathy Brown, Cedric Arisdakessian, Mahdi Belcaid
Publikováno v:
The ISME Journal
Infectious pathogens can disrupt the microbiome in addition to directly affecting the host. Impacts of disease may be dependent on the ability of the microbiome to recover from such disturbance, yet remarkably little is known about microbiome recover
Publikováno v:
G3: Genes, Genomes, Genetics, Vol 10, Iss 5, Pp 1775-1783 (2020)
G3: Genes|Genomes|Genetics
G3: Genes|Genomes|Genetics
Alignment of scRNA-Seq data are the first and one of the most critical steps of the scRNA-Seq analysis workflow, and thus the choice of proper aligners is of paramount importance. Recently, STAR an alignment method and Kallisto a pseudoalignment meth
Publikováno v:
SAC
Sequence clustering is an important computational step in numerous bioinformatics applications such as high-throughput immune system characterization, marker-based diversity profiling, and reduced-complexity population genetic experiments. However, c
Publikováno v:
PEARC
Computational scalability has become an important requirement for processing the massive amounts of data generated in contemporary sequencing-based experiments. The availability of large computational resources through academic, regional or national
Publikováno v:
Bioinformatics (Oxford, England).
Motivation Metagenomic approaches hold the potential to characterize microbial communities and unravel the intricate link between the microbiome and biological processes. Assembly is one of the most critical steps in metagenomics experiments. It cons
Autor:
David Garmire, Cedric Arisdakessian, Xun Zhu, Lana X. Garmire, Austin Tasato, Thomas K. Wolfgruber
Publikováno v:
Genome Medicine, Vol 9, Iss 1, Pp 1-12 (2017)
Genome Medicine
Genome Medicine
Background Single-cell RNA sequencing (scRNA-Seq) is an increasingly popular platform to study heterogeneity at the single-cell level. Computational methods to process scRNA-Seq data are not very accessible to bench scientists as they require a signi
Autor:
Cedric Arisdakessian, Yu Liu, Qianhui Huang, Xun Zhu, Thomas K. Wolfgruber, Breck Yunits, Tianying Zhao, Stefan Stanojevic, Lana X. Garmire, Olivier Poirion, David Garmire, Aravind Mantravadi
We present GranatumX, a next-generation software environment for single-cell data analysis. GranatumX is inspired by the interactive web tool Granatum. It enables biologists to access the latest single-cell bioinformatics methods in a web-based graph
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::bdee3c20385edbf9dcc97d0b544f747e
https://doi.org/10.1101/385591
https://doi.org/10.1101/385591