Zobrazeno 1 - 10
of 20
pro vyhledávání: '"Cedoljub Bundalovic-Torma"'
Autor:
Fabien Lonjon, Yan Lai, Nasrin Askari, Niharikaa Aiyar, Cedoljub Bundalovic-Torma, Bradley Laflamme, Pauline W. Wang, Darrell Desveaux, David S. Guttman
Publikováno v:
Nature Communications, Vol 15, Iss 1, Pp 1-14 (2024)
Abstract Tomato (Solanum lycopersicum) is one of the world’s most important food crops, and as such, its production needs to be protected from infectious diseases that can significantly reduce yield and quality. Here, we survey the effector-trigger
Externí odkaz:
https://doaj.org/article/725faed892ce4850a0b84c59638f8ac6
Predictive modeling of Pseudomonas syringae virulence on bean using gradient boosted decision trees.
Autor:
Renan N D Almeida, Michael Greenberg, Cedoljub Bundalovic-Torma, Alexandre Martel, Pauline W Wang, Maggie A Middleton, Syama Chatterton, Darrell Desveaux, David S Guttman
Publikováno v:
PLoS Pathogens, Vol 18, Iss 7, p e1010716 (2022)
Pseudomonas syringae is a genetically diverse bacterial species complex responsible for numerous agronomically important crop diseases. Individual P. syringae isolates are assigned pathovar designations based on their host of isolation and the associ
Externí odkaz:
https://doaj.org/article/c66c2678c99b4c61842f24e23cae2bc7
Publikováno v:
PLoS Computational Biology, Vol 18, Iss 2, p e1009899 (2022)
A critical step in studying biological features (e.g., genetic variants, gene families, metabolic capabilities, or taxa) is assessing their diversity and distribution among a sample of individuals. Accurate assessments of these patterns are essential
Externí odkaz:
https://doaj.org/article/384e7344e15440a9911518c492de6750
Autor:
Cedoljub Bundalovic-Torma, Gregory B Whitfield, Lindsey S Marmont, P Lynne Howell, John Parkinson
Publikováno v:
PLoS Computational Biology, Vol 16, Iss 4, p e1007721 (2020)
In bacteria functionally related genes comprising metabolic pathways and protein complexes are frequently encoded in operons and are widely conserved across phylogenetically diverse species. The evolution of these operon-encoded processes is affected
Externí odkaz:
https://doaj.org/article/f736ec1431c2443494dbb45159b171b5
Autor:
Gregory B Whitfield, Lindsey S Marmont, Cedoljub Bundalovic-Torma, Erum Razvi, Elyse J Roach, Cezar M Khursigara, John Parkinson, P Lynne Howell
Publikováno v:
PLoS Pathogens, Vol 16, Iss 4, p e1008281 (2020)
Our understanding of the biofilm matrix components utilized by Gram-positive bacteria, and the signalling pathways that regulate their production are largely unknown. In a companion study, we developed a computational pipeline for the unbiased identi
Externí odkaz:
https://doaj.org/article/fb2985e1eff94bc5b2be4e3b966cd552
Autor:
Ashwani Kumar, Natalia Beloglazova, Cedoljub Bundalovic-Torma, Sadhna Phanse, Viktor Deineko, Alla Gagarinova, Gabriel Musso, James Vlasblom, Sofia Lemak, Mohsen Hooshyar, Zoran Minic, Omar Wagih, Roberto Mosca, Patrick Aloy, Ashkan Golshani, John Parkinson, Andrew Emili, Alexander F. Yakunin, Mohan Babu
Publikováno v:
Cell Reports, Vol 14, Iss 3, Pp 648-661 (2016)
As antibiotic resistance is increasingly becoming a public health concern, an improved understanding of the bacterial DNA damage response (DDR), which is commonly targeted by antibiotics, could be of tremendous therapeutic value. Although the genetic
Externí odkaz:
https://doaj.org/article/9fbd82c0796d4664a9c936ea2215594d
Autor:
Mohan Babu, Roland Arnold, Cedoljub Bundalovic-Torma, Alla Gagarinova, Keith S Wong, Ashwani Kumar, Geordie Stewart, Bahram Samanfar, Hiroyuki Aoki, Omar Wagih, James Vlasblom, Sadhna Phanse, Krunal Lad, Angela Yeou Hsiung Yu, Christopher Graham, Ke Jin, Eric Brown, Ashkan Golshani, Philip Kim, Gabriel Moreno-Hagelsieb, Jack Greenblatt, Walid A Houry, John Parkinson, Andrew Emili
Publikováno v:
PLoS Genetics, Vol 10, Iss 2, p e1004120 (2014)
Large-scale proteomic analyses in Escherichia coli have documented the composition and physical relationships of multiprotein complexes, but not their functional organization into biological pathways and processes. Conversely, genetic interaction (GI
Externí odkaz:
https://doaj.org/article/2896e8427bcd49608cc1b53f2c8d503b
Publikováno v:
Annual Review of Phytopathology. 60:211-236
Pseudomonas syringae is an evolutionarily diverse bacterial species complex and a preeminent model for the study of plant–pathogen interactions due in part to its remarkably broad host range. A critical feature of P. syringae virulence is the emplo
Autor:
David S. Guttman, Haejin Kwak, Tatiana Ruiz-Bedoya, Cedoljub Bundalovic-Torma, Marcus M. Dillon, Pauline W. Wang, Sümer Horuz, Kevin M. Guttman, M A Middleton, Yeşim Aysan
Publikováno v:
Microbial Genomics
Pseudomonas is a highly diverse genus that includes species that cause disease in both plants and animals. Recently, pathogenic pseudomonads from the Pseudomonas syringae and Pseudomonas fluorescens species complexes have caused significant outbreaks
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::456347a71c49e4fa9f97c90703b7c1d1
https://avesis.erciyes.edu.tr/publication/details/6bbdce60-8950-4127-8974-fe7cbcde1f29/oai
https://avesis.erciyes.edu.tr/publication/details/6bbdce60-8950-4127-8974-fe7cbcde1f29/oai
Publikováno v:
The Biochemist. 41:22-25
Jonathan Swift said, ‘Every man desires to live long, but no man wishes to be old’. Most of us have ambivalent feelings about aging. We may want a long life, but those extra years hold less appeal if we are too ill to enjoy them. At one extreme o