Target capture and genome skimming for plant diversity studies

Autor: Flávia Fonseca Pezzini, Giada Ferrari, Laura L. Forrest, Michelle L. Hart, Kanae Nishii, Catherine A. Kidner

Publikováno v: Applications in Plant Sciences, Vol 11, Iss 4, Pp n/a-n/a (2023)

Abstract Recent technological advances in long‐read high‐throughput sequencing and assembly methods have facilitated the generation of annotated chromosome‐scale whole‐genome sequence data for evolutionary studies; however, generating such da

Externí odkaz: https://doaj.org/article/ad2b1bbab6264618bef32bcbeceeac74

Multi-tissue transcriptome analysis of two Begonia species reveals dynamic patterns of evolution in the chalcone synthase gene family

Autor: Andrea Martínez Martínez, Lucia Campos-Dominguez, Catherine A. Kidner, Katie Emelianova

Publikováno v: Scientific Reports, Vol 11, Iss 1, Pp 1-12 (2021)
Scientific Reports
Emelianova, K, Martínez Martínez, A, Campos-Dominguez, L, Kidner, C 2021, ' Multi-tissue transcriptome analysis of two Begonia species reveals dynamic patterns of evolution in the chalcone synthase gene family ', Scientific Reports, vol. 11, no. 1, 17773 . https://doi.org/10.1038/s41598-021-96854-y

Begonia is an important horticultural plant group, as well as one of the most speciose Angiosperm genera, with over 2000 described species. Genus wide studies of genome size have shown that Begonia has a highly variable genome size, and analysis of p

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d31d74ac874db2566dadc672e9da37b8
https://doaj.org/article/2016d1571585419193ee7b2fcafbd152

The origin of the legumes is a complex paleopolyploid phylogenomic tangle closely associated with the Cretaceous–Paleogene (K–Pg) mass extinction event

Autor: Anne Bruneau, Olivier J. Hardy, R. Toby Pennington, Erik J. M. Koenen, Freek T. Bakker, Jan J. Wieringa, Patrick S. Herendeen, Colin E. Hughes, Dario I. Ojeda, Catherine A. Kidner

Publikováno v: Systematic Biology 70 (2021) 3
Koenen, E J M, Ojeda, D I, Bakker, F T, Wieringa, J J, Kidner, C, Hardy, O J, Pennington, R T, Herendeen, P S, Bruneau, A & Hughes, C E 2020, ' The origin of the legumes is a complex paleopolyploid phylogenomic tangle closely associated with the cretaceous-paleogene (K-Pg) mass extinction event ', Systematic biology . https://doi.org/10.1093/sysbio/syaa041
Systematic Biology, 70(3), 508-526
Systematic biology, 70 (3
Systematic Biology
syaa041

The consequences of the Cretaceous–Paleogene (K–Pg) boundary (KPB) mass extinction for the evolution of plant diversity remain poorly understood, even though evolutionary turnover of plant lineages at the KPB is central to understanding assembly

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ab502d82b990d732d31fec092678845d
https://www.zora.uzh.ch/id/eprint/189894/

Hybrid capture of 964 nuclear genes resolves evolutionary relationships in the mimosoid legumes and reveals the polytomous origins of a large pantropical radiation

Autor: Gwilym P. Lewis, Melissa Luckow, James A. Nicholls, Élvia R. de Souza, R. Toby Pennington, Gillian K. Brown, Marcelo F. Simon, Erik J. M. Koenen, João Ricardo Vieira Iganci, Luciano Paganucci de Queiroz, Catherine A. Kidner, Colin E. Hughes

Publikováno v: Koenen, E J M, Kidner, C A, de Souza, É R, Simon, M F, Iganci, J R, Nicholls, J, Brown, G K, P. De Queiroz, L, Luckow, M, Lewis, G P, Pennington, R T & Hughes, C E 2020, ' Hybrid capture of 964 nuclear genes resolves evolutionary relationships in the mimosoid legumes and reveals the polytomous origins of a large pantropical radiation ', American Journal of Botany, vol. 107, no. 12, 1568, pp. 1710-1735 . https://doi.org/10.1002/ajb2.1568
American Journal of Botany

Premise of the study: Targeted enrichment methods facilitate sequencing of hundreds of nuclear loci to enhance phylogenetic resolution and elucidate why some parts of the Tree of Life are difficult (if not impossible) to resolve. The mimosoid legumes

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4c01cb74bb1ccfa4449387dceae285e3
https://hdl.handle.net/20.500.11820/c3d9786e-a19f-4b9b-9eac-59ccd73ac104

QTL dissection of floral traits in Streptocarpus (Gesneriaceae)

Autor: Yun-Yu Chen, Kanae Nishii, Michael Möller, Catherine A. Kidner, Christine A. Hackett

Publikováno v: Euphytica. 216

Flower shape and colour are key plant traits which are often strongly correlated with pollinator choice and reproductive isolation. To understand the genetic changes underlying variation in these traits, we performed the first QTL analyses of these t

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::50bd028e5aba2c616b963759725d1133
https://doi.org/10.1007/s10681-020-02647-1