Zobrazeno 1 - 10
of 113
pro vyhledávání: '"Casey M, Bergman"'
Publikováno v:
Mobile DNA, Vol 14, Iss 1, Pp 1-19 (2023)
Abstract Background Many computational methods have been developed to detect non-reference transposable element (TE) insertions using short-read whole genome sequencing data. The diversity and complexity of such methods often present challenges to ne
Externí odkaz:
https://doaj.org/article/5db00dade9bc47d08c5e99a9182ae814
Autor:
Guilherme B. Dias, Musaad A. Altammami, Hamadttu A. F. El-Shafie, Fahad M. Alhoshani, Mohamed B. Al-Fageeh, Casey M. Bergman, Manee M. Manee
Publikováno v:
Scientific Reports, Vol 11, Iss 1, Pp 1-14 (2021)
Abstract The red palm weevil Rhynchophorus ferrugineus (Coleoptera: Curculionidae) is an economically-important invasive species that attacks multiple species of palm trees around the world. A better understanding of gene content and function in R. f
Externí odkaz:
https://doaj.org/article/41f6308fa46242ac8647c605a7ed142d
Autor:
Guilherme B. Dias, Ahmad M. Aldossary, Hamadttu A.F. El-Shafie, Fahad M. Alhoshani, Mohamed B. Al-Fageeh, Casey M. Bergman, Manee M. Manee
Publikováno v:
Mitochondrial DNA. Part B. Resources, Vol 6, Iss 11, Pp 3214-3216 (2021)
The 15,619 bp mitochondrial genome of Jebusaea hammerschmidtii was assembled from short reads, annotated, and compared to the genomes of other longhorn beetles (Cerambycidae). Gene content was typical of animal mitochondrial genomes and contained 13
Externí odkaz:
https://doaj.org/article/c78ee570eba7475d956b8f381a3bc7cc
Autor:
Matthew Chung, Preston J. Basting, Rayanna S. Patkus, Alexandra Grote, Ashley N. Luck, Elodie Ghedin, Barton E. Slatko, Michelle Michalski, Jeremy M. Foster, Casey M. Bergman, Julie C. Dunning Hotopp
Publikováno v:
G3: Genes, Genomes, Genetics, Vol 10, Iss 9, Pp 3243-3260 (2020)
Wolbachia is a genus containing obligate, intracellular endosymbionts with arthropod and nematode hosts. Numerous studies have identified differentially expressed transcripts in Wolbachia endosymbionts that potentially inform the biological interplay
Externí odkaz:
https://doaj.org/article/3e5d92a74bcd4481a9a2646cc7012433
Autor:
Lucas W. Hemmer, Guilherme B. Dias, Brittny Smith, Kelley Van Vaerenberghe, Ashley Howard, Casey M. Bergman, Justin P. Blumenstiel
Publikováno v:
Mobile DNA, Vol 11, Iss 1, Pp 1-18 (2020)
Abstract Background Transposable elements (TEs) are endogenous mutagens and their harmful effects are especially evident in syndromes of hybrid dysgenesis. In Drosophila virilis, hybrid dysgenesis is a syndrome of incomplete gonadal atrophy that occu
Externí odkaz:
https://doaj.org/article/0bc05b2e984c4132b1cb873425184fb8
Publikováno v:
G3: Genes, Genomes, Genetics, Vol 9, Iss 11, Pp 3547-3554 (2019)
Although normally a harmless commensal, Candida albicans, it is also one of the most common causes of bloodstream infections in the U.S. Candida albicans has long been considered an obligate commensal, however, recent studies suggest it can live outs
Externí odkaz:
https://doaj.org/article/7ae3383666dc484e8e092de70045b9d9
Autor:
Céline Duc, Marianne Yoth, Silke Jensen, Nolwenn Mouniée, Casey M. Bergman, Chantal Vaury, Emilie Brasset
Publikováno v:
Genome Biology, Vol 20, Iss 1, Pp 1-14 (2019)
Abstract Background For species survival, the germline must faithfully transmit genetic information to the progeny. Transposable elements (TEs) constitute a significant threat to genome stability due to their mobility. In the metazoan germline, their
Externí odkaz:
https://doaj.org/article/e52f28b8c20a438597edef1d75defe55
Publikováno v:
PLoS Genetics, Vol 16, Iss 2, p e1008632 (2020)
Transposable elements constitute a large fraction of most eukaryotic genomes. Insertion of mobile DNA sequences typically has deleterious effects on host fitness, and thus diverse mechanisms have evolved to control mobile element proliferation. Mobil
Externí odkaz:
https://doaj.org/article/1163b769c3f3435ca8cbad180c0b1cce
Autor:
Casey M. Bergman
Publikováno v:
Mobile DNA, Vol 9, Iss 1, Pp 1-8 (2018)
Abstract Background Recent evidence suggests that horizontal transfer plays a significant role in the evolution of of transposable elements (TEs) in eukaryotes. Many cases of horizontal TE transfer (HTT) been reported in animals and plants, however s
Externí odkaz:
https://doaj.org/article/5a23f039f2454d82a77cacdbf3bedeb9
Publikováno v:
G3: Genes, Genomes, Genetics, Vol 7, Iss 8, Pp 2763-2778 (2017)
Transposable element (TE) insertions are among the most challenging types of variants to detect in genomic data because of their repetitive nature and complex mechanisms of replication . Nevertheless, the recent availability of large resequencing dat
Externí odkaz:
https://doaj.org/article/e8ead39b6e454d9aaba2dcfd0d81f276