Analysis of community connectivity in spatial transcriptomics data

Autor: Juan Xie, Kyeong Joo Jung, Carter Allen, Yuzhou Chang, Subhadeep Paul, Zihai Li, Qin Ma, Dongjun Chung

Publikováno v: Frontiers in Applied Mathematics and Statistics, Vol 10 (2024)

IntroductionThe advent of high throughput spatial transcriptomics (HST) has allowed for unprecedented characterization of spatially distinct cell communities within a tissue sample. While a wide range of computational tools exist for detecting cell c

Externí odkaz: https://doaj.org/article/dcf9483cfe944eee8fd28f6e75addad5

The transiting exoplanet community early release science program for JWST

Autor: Bean, JL, Stevenson, KB, Batalha, NM, Berta-Thompson, Z, Kreidberg, L, Crouzet, N, Benneke, B, Line, MR, Sing, DK, Wakeford, HR, Knutson, HA, Kempton, EMR, Désert, JM, Crossfield, I, Batalha, NE, De Wit, J, Parmentier, V, Harrington, J, Moses, JI, Lopez-Morales, M, Alam, MK, Blecic, J, Bruno, G, Carter, AL, Chapman, JW, Decin, L, Dragomir, D, Evans, TM, Fortney, JJ, Fraine, JD, Gao, P, Muñoz, AG, Gibson, NP, Goyal, JM, Heng, K, Hu, R, Kendrew, S, Kilpatrick, BM, Krick, J, Lagage, PO, Lendl, M, Louden, T, Madhusudhan, N, Mandell, AM, Mansfield, M, May, EM, Morello, G, Morley, CV, Nikolov, N, Redfield, S, Roberts, JE, Schlawin, E, Spake, JJ, Todorov, KO, Tsiaras, A, Venot, O, Waalkes, WC, Wheatley, PJ, Zellem, RT, Angerhausen, D, Barrado, D, Carone, L, Casewell, SL, Cubillos, PE, Damiano, M, Borro, MDV, Drummond, B, Edwards, B, Endl, M, Espinoza, N, France, K, Gizis, JE, Greene, TP, Henning, TK, Hong, Y, Ingalls, JG, Iro, N, Irwin, PGJ, Kataria, T, Lahuis, F, Leconte, J, Lillo-Box, J, Lines, S, Lothringer, JD, Mancini, L, Marchis, F, Mayne, N, Palle, E, Rauscher, E, Roudier, G, Shkolnik, EL, Southworth, J, Swain, MR, Taylor, J, Teske, J, Tinetti, G, Tremblin, P, Tucker, GS, Boekel, RV, Waldmann, IP

The James Webb Space Telescope (JWST) presents the opportunity to transform our understanding of planets and the origins of life by revealing the atmospheric compositions, structures, and dynamics of transiting exoplanets in unprecedented detail. How

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::419c9125f068fd373340cd15f98cbeed
https://www.repository.cam.ac.uk/handle/1810/316352

Define and visualize pathological architectures of human tissues from spatially resolved transcriptomics using deep learning

Autor: Yuzhou Chang, Fei He, Juexin Wang, Shuo Chen, Jingyi Li, Jixin Liu, Yang Yu, Li Su, Anjun Ma, Carter Allen, Yu Lin, Shaoli Sun, Bingqiang Liu, José Javier Otero, Dongjun Chung, Hongjun Fu, Zihai Li, Dong Xu, Qin Ma

Publikováno v: Computational and Structural Biotechnology Journal, Vol 20, Iss , Pp 4600-4617 (2022)

Spatially resolved transcriptomics provides a new way to define spatial contexts and understand the pathogenesis of complex human diseases. Although some computational frameworks can characterize spatial context via various clustering methods, the de

Externí odkaz: https://doaj.org/article/99219ce25b7041c496643be4bc86b4e4

The Sudbury Neutrino Observatory

Autor: Boger, J, Hahn, RL, Rowley, JK, Carter, AL, Hollebone, B, Kessler, D, Blevis, I, Dalnoki-Veress, F, DeKok, A, Farine, J, Grant, DR, Hargrove, CK, Laberge, G, Levine, I, McFarlane, K, Mes, H, Noble, AT, Novikov, VM, O'Neill, M, Shatkay, M, Shewchuk, C, Sinclair, D, Clifford, ETH, Deal, R, Earle, ED, Gaudette, E, Milton, G, Sur, B, Bigu, J, Cowan, JHM, Cluff, DL, Hallman, ED, Haq, RU, Hewett, J, Hykawy, JG, Jonkmans, G, Michaud, R, Roberge, A, Roberts, J, Saettler, E, Schwendener, MH, Seifert, H, Sweezey, D, Tafirout, R, Virtue, CJ, Beck, DN, Chan, YD, Chen, X, Dragowsky, MR, Dycus, FW, Gonzalez, J, Isaac, MCP, Kajiyama, Y, Koehler, GW, Lesko, KT, Moebus, MC, Norman, EB, Okada, CE, Poon, AWP, Purgalis, P, Schuelke, A, Smith, AR, Stokstad, RG, Turner, S, Zlimen, I, Anaya, JM, Bowles, TJ, Brice, SJ, Esch, EI, Fowler, MM, Goldschmidt, A, Hime, A, McGirt, AF, Miller, GG, Teasdale, WA, Wilhelmy, JB, Wouters, JM, Anglin, JD, Bercovitch, M, Davidson, WF, Storey, RS, Biller, S, Black, RA, Boardman, RJ, Bowler, MG, Cameron, J, Cleveland, B, Ferraris, AP, Doucas, G, Heron, H, Howard, C, Jelley, NA, Knox, AB, Lay, M, Locke, W, Lyon, J, Majerus, S, Moorhead, M, Omori, M, Tanner, NW, Taplin, RK, Thorman, M, Wark, DL, West, N, Barton, JC, Trent, PT, Kouzes, R, Lowry, MM, Bell, AL, Bonvin, E, Boulay, M, Dayon, M, Duncan, F, Erhardt, LS, Evans, HC, Ewan, GT, Ford, R, Hallin, A, Hamer, A, Hart, PM, Harvey, PJ, Haslip, D, Hearns, CAW, Heaton, R, Hepburn, JD, Jillings, CJ, Korpach, EP, Lee, HW, Leslie, JR, Liu, MQ, Mak, HB, McDonald, AB, MacArthur, JD, McLatchie, W, Moffat, BA, Noel, S, Radcliffe, TJ, Robertson, BC, Skensved, P, Stevenson, RL, Zhu, X, Gil, S, Heise, J, Helmer, RL, Komar, RJ, Nally, CW, Ng, HS, Waltham, CE, Allen, RC, Buhler, G, Chen, HH, Aardsma, G, Andersen, T, Cameron, K, Chon, MC, Hanson, RH, Jagam, P, Karn, J, Law, J, Ollerhead, RW, Simpson, JJ, Tagg, N, Wang, JX, Alexander, C, Beier, EW, Cook, JC, Cowen, DF, Frank, ED, Frati, W, Keener, PT, Klein, JR, Mayers, G, McDonald, DS, Neubauer, MS, Newcomer, FM, Pearce, RJ, Van de Water, RG, Van Berg, R, Wittich, P, Ahmad, QR, Beck, JM, Browne, MC, Burritt, TH, Doe, PJ, Duba, CA, Elliott, SR, Franklin, JE, Germani, JV, Green, P, Hamian, AA, Heeger, KM, Howe, M, Drees, RM, Myers, A, Robertson, RGH, Smith, MWE, Steiger, TD, Van Wechel, T, Wilkerson, JF, Collaboration, SNO

Publikováno v: NUCLEAR INSTRUMENTS and METHODS IN PHYSICS RESEARCH SECTION A-ACCELERATORS SPECTROMETERS DETECTORS AND ASSOCIATED EQUIPMENT. 449(1-2)

The Sudbury Neutrino Observatory is a second generation water Cherenkov detector designed to determine whether the currently observed solar neutrino deficit is a result of neutrino oscillations. The detector is unique in its use of D2O as a detection

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f969b77557bc1d31166eb59da2455026
http://ora.ox.ac.uk/objects/uuid:9cf2e27c-ee89-4878-9682-8390d6321f6f

Citizen science reveals unexpected solute patterns in semiarid river networks.

Autor: Erin Fleming Jones, Rebecca J Frei, Raymond M Lee, Jordan D Maxwell, Rhetta Shoemaker, Andrew P Follett, Gabriella M Lawson, Madeleine Malmfeldt, Rachel Watts, Zachary T Aanderud, Carter Allred, Allison Tuttle Asay, Madeline Buhman, Hunter Burbidge, Amber Call, Trevor Crandall, Isabella Errigo, Natasha A Griffin, Neil C Hansen, Jansen C Howe, Emily L Meadows, Elizabeth Kujanpaa, Leslie Lange, Monterey L Nelson, Adam J Norris, Elysse Ostlund, Nicholas J Suiter, Kaylee Tanner, Joseph Tolworthy, Maria Camila Vargas, Benjamin W Abbott

Publikováno v: PLoS ONE, Vol 16, Iss 8, p e0255411 (2021)

Human modification of water and nutrient flows has resulted in widespread degradation of aquatic ecosystems. The resulting global water crisis causes millions of deaths and trillions of USD in economic damages annually. Semiarid regions have been dis

Externí odkaz: https://doaj.org/article/19cb138c0de947a4b338c9dabed3d48f