UMI-Gen: A UMI-based read simulator for variant calling evaluation in paired-end sequencing NGS libraries

Autor: Caroline Bérard, Thierry Lecroq, Fabrice Jardin, Vincent Sater, Pierre-Julien Viailly, Philippe Ruminy, Élise Prieur-Gaston

Publikováno v: Computational and Structural Biotechnology Journal
Computational and Structural Biotechnology Journal, Elsevier, 2020, 18, pp.2270-2280. ⟨10.1016/j.csbj.2020.08.011⟩
Computational and Structural Biotechnology Journal, Vol 18, Iss, Pp 2270-2280 (2020)

MotivationWith Next Generation Sequencing becoming more affordable every year, NGS technologies asserted themselves as the fastest and most reliable way to detect Single Nucleotide Variants (SNV) and Copy Number Variations (CNV) in cancer patients. T

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c1ad3950c9a83289554e2e4b63e305ee
https://doi.org/10.1016/j.csbj.2020.08.011

The RNA helicases AtMTR4 and HEN2 target specific subsets of nuclear transcripts for degradation by the nuclear exosome in Arabidopsis thaliana.

Autor: Heike Lange, Hélène Zuber, François M Sement, Johana Chicher, Lauriane Kuhn, Philippe Hammann, Véronique Brunaud, Caroline Bérard, Nathalie Bouteiller, Sandrine Balzergue, Sébastien Aubourg, Marie-Laure Martin-Magniette, Hervé Vaucheret, Dominique Gagliardi

Publikováno v: PLoS Genetics, Vol 10, Iss 8, p e1004564 (2014)

The RNA exosome is the major 3'-5' RNA degradation machine of eukaryotic cells and participates in processing, surveillance and turnover of both nuclear and cytoplasmic RNA. In both yeast and human, all nuclear functions of the exosome require the RN

Externí odkaz: https://doaj.org/article/710c1e580ee1447b91382568c2b2f192

Comparative in depth RNA sequencing of P. tricornutum’s morphotypes reveals specific features of the oval morphotype

Autor: Sophie Bernard, Marie-Christine Kiefer-Meyer, Isabelle Tournier, Muriel Bardor, Azeddine Driouich, Nicolas Vergne, Patrice Lerouge, Carole Plasson, Hélène Dauchel, Carole Burel, Clément Ovide, Thierry Lecroq, Caroline Bérard

Publikováno v: Scientific Reports
Scientific Reports, Nature Publishing Group, 2018, 8 (1), pp.14340. ⟨10.1038/s41598-018-32519-7⟩
Scientific Reports, Vol 8, Iss 1, Pp 1-19 (2018)

International audience; Phaeodactylum tricornutum is the most studied diatom encountered principally in coastal unstable environments. It has been hypothesized that the great adaptability of P. tricornutum is probably due to its pleomorphism. Indeed,

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ac11ea7f482818f60eadecdecf316374
https://doi.org/10.1038/s41598-018-32519-7

Modeling and control of a space robot for active debris removal

Autor: Daniel Alazard, Vincent Dubanchet, Catherine Le Peuvédic, Caroline Bérard, David Saussié

Publikováno v: CEAS Space Journal. 7:203-218

Space access and satellites lifespan are increasingly threatened by the great amount of debris in Low Earth Orbits. Among the many solutions proposed in the literature so far, the emphasis is put here on a robotic arm mounted on a “chaser” satell

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::6953a8b0f87c3ed01f83dc3c701d1df5
https://doi.org/10.1007/s12567-015-0082-4

Cell wall biochemical alterations during Agrobacterium -mediated expression of haemagglutinin-based influenza virus-like vaccine particles in tobacco

Autor: Azeddine Driouich, Manon Couture, Muriel Bardor, Corinne Loutelier-Bourhis, Louis-Philippe Vézina, Alain Doucet, François Le Mauff, Patrice Lerouge, Marc-André D'Aoust, Caroline Bérard

Publikováno v: Plant Biotechnology Journal
Plant Biotechnology Journal, Wiley, 2017, 15 (3), pp.285-296. ⟨10.1111/pbi.12607⟩
Plant Biotechnology Journal, 2017, 15 (3), pp.285-296. ⟨10.1111/pbi.12607⟩

International audience; Influenza virus‐like particles (VLPs) have been shown to induce a safe and potent immune response through both humoral and cellular responses. They represent promising novel influenza vaccines. Plant‐based biotechnology al

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::013e0e54c464a1d766c12e0c10fc0cee
https://hal.archives-ouvertes.fr/hal-01777662/document