Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean Metatranscriptome

Autor: Salazar Guiral, Guillem, Paoli, Lucas, Alberti, Adriana, Huerta-Cepas, Jaime, Ruscheweyh, Hans-Joachim, Cuenca Vera, Miguelangel, Field, Christopher, Coelho, Luis Pedro, Cruaud, Corinne, Engelen, Stefan, Gregory, Ann C., Labadie, Karine, Marec, Claudie, Pelletier, Eric, Royo-Llonch, Marta, Roux, Simon, Sánchez, Pablo, Uehara, Hideya, Zayed, Ahmed A., Zeller, Georg, Carmichael, Margaux, Dimier, Céline, Ferland, Joannie, Kandels, Stefanie, Picheral, Marc, Pisarev, Sergey, Poulain, Julie, Tara Oceans Coordinators, Wincker, Patrick, Acinas, Silvia G., Babin, Marcel, Bork, Peer, Boss, Emmanuel, Bowler, Chris, Cochrane, Guy R., de Vargas, Colomban, Follows, Michael J., Gorsky, Gabriel, Grimsley, Nigel, Guidi, Lionel, Hingamp, Pascal, Iudicone, Daniele, Jaillon, Olivier, Kandels-Lewis, Stefanie, Karp-Boss, Lee, Karsenti, Eric, Not, Fabrice, Ogata, Hiroyuki, Pesant, Stéphane, Poulton, Nicole, Raes, Jeroen, Sardet, Christian, Speich, Sabrina, Stemmann, Lars, Sullivan, Matthew, Sunagawa, Shinichi

Publikováno v: Cell, 179 (5)

Ocean microbial communities strongly influence the biogeochemistry, food webs, and climate of our planet. Despite recent advances in understanding their taxonomic and genomic compositions, little is known about how their transcriptomes vary globally.

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4f524d2eb4370f4453d7bc667b7a6631
https://hdl.handle.net/20.500.11850/379269

Global Trends in Marine Plankton Diversity across Kingdoms of Life

Autor: Ibarbalz, Federico M., Henry, Nicolas, Brandão, Manoela C., Martini, Séverine, Busseni, Greta, Byrne, Hannah, Coelho, Luis Pedro, Endo, Hisashi, Gasol, Josep M., Gregory, Ann C., Mahé, Frédéric, Rigonato, Janaina, Royo-Llonch, Marta, Salazar, Guillem, Sanz-Sáez, Isabel, Scalco, Eleonora, Soviadan, Dodji, Zayed, Ahmed A., Zingone, Adriana, Labadie, Karine, Ferland, Joannie, Marec, Claudie, Kandels, Stefanie, Picheral, Marc, Dimier, Céline, Poulain, Julie, Pisarev, Sergey, Carmichael, Margaux, Pesant, Stéphane, Babin, Marcel, Boss, Emmanuel, Iudicone, Daniele, Jaillon, Olivier, Acinas, Silvia G., Ogata, Hiroyuki, Pelletier, Eric, Stemmann, Lars, Sullivan, Matthew B., Sunagawa, Shinichi, Bopp, Laurent, de Vargas, Colomban, Karp-Boss, Lee, Wincker, Patrick, Lombard, Fabien, Bowler, Chris, Zinger, Lucie

Publikováno v: Digital.CSIC. Repositorio Institucional del CSIC
instname
Cell

35 pages, 18 figures, 1 table, supplementary information https://doi.org/10.1016/j.cell.2019.10.008.-- Raw reads of Tara Oceans are deposited at the European Nucleotide Archive (ENA). In particular, newly released 18S rRNA gene metabarcoding reads ar

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid_dedup__::432b81a6981b24d0b7806f4049f8ef8e
http://hdl.handle.net/10261/197542

Marine DNA Viral Macro- and Microdiversity from Pole to Pole

Autor: Gregory, Ann C, Zayed, Ahmed A, Conceição-Neto, Nádia, Temperton, Ben, Bolduc, Ben, Alberti, Adriana, Ardyna, Mathieu, Arkhipova, Ksenia, Carmichael, Margaux, Cruaud, Corinne, Dimier, Céline, Domínguez-Huerta, Guillermo, Ferland, Joannie, Kandels, Stefanie, Liu, Yunxiao, Marec, Claudie, Pesant, Stéphane, Picheral, Marc, Pisarev, Sergey, Poulain, Julie, Tremblay, Jean-Éric, Vik, Dean, Tara Oceans Coordinators, Babin, Marcel, Bowler, Chris, Culley, Alexander I, de Vargas, Colomban, Dutilh, Bas E, Iudicone, Daniele, Karp-Boss, Lee, Roux, Simon, Sunagawa, Shinichi, Wincker, Patrick, Sullivan, Matthew B

Publikováno v: Gregory, Ann C; Zayed, Ahmed A; Conceição-Neto, Nádia; Temperton, Ben; Bolduc, Ben; Alberti, Adriana; et al.(2019). Marine DNA Viral Macro-and Microdiversity from Pole to Pole.. Cell, 177(5), 1109-1123.e14. doi: 10.1016/j.cell.2019.03.040. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/77m8k1md
Cell, vol 177, iss 5

Microbes drive most ecosystems and are modulated by viruses that impact their lifespan, gene flow, and metabolic outputs. However, ecosystem-level impacts of viral community diversity remain difficult to assess due to classification issues and few re

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::5edea3859613c25e0e9c105adfa56265
http://www.escholarship.org/uc/item/77m8k1md

First Tara Oceans V9 rDNA metabarcoding dataset

Autor: de Vargas, Colomban, Audic, Stéphane, Henry, Nicolas, Decelle, Johan, Mahé, Frédéric, Logares, Ramiro, Lara, Enrique, Berney, Cédric, Le Bescot, Noan, Probert, Ian, Carmichael, Margaux, Poulain, Julie, Romac, Sarah, Colin, Sébastien, Aury, Jean-Marc, Bittner, Lucie, Chaffron, Samuel, Dunthorn, Micah, Engelen, Stefan, Flegontova, Olga, Guidi, Lionel, Horák, Aleš, Jaillon, Olivier, Lima-Mendez, Gipsi, Lukeš, Julius, Malviya, Shruti, Morard, Raphael, Mulot, Matthieu, Scalco, Eleonora, Siano, Raffaele, Vincent, Flora, Zingone, Adriana, Dimier, Céline, Picheral, Marc, Searson, Sarah, Kandels-Lewis, Stefanie, Tara Oceans Coordinators, Acinas, Silvia G., Bork, Peer, Bowler, Chris, Gorsky, Gabriel, Grimsley, Nigel, Hingamp, Pascal, Iudicone, Daniele, Not, Fabrice, Ogata, Hiroyuki, Pesant, Stephane, Raes, Jeroen, Sieracki, Mike, Speich, Sabrina, Stemmann, Lars, Sunagawa, Shinichi, Weissenbach, Jean, Wincker, Patrick, Karsenti, Eric

Accompanying material, text, data and figures for the article de Vargas et al., 'Eukaryotic plankton diversity in the sunlit ocean', Science 348, 1261605 (2015), doi: 10.1126/science.1261605  

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::19fbe4c84d83358538605e7aef95a00d

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