Analysis of pir gene expression across the Plasmodium life cycle

Autor: Timothy S. Little, Deirdre A. Cunningham, Audrey Vandomme, Carlos Talavera Lopez, Sarah Amis, Christopher Alder, John W. G. Addy, Sarah McLaughlin, Caroline Hosking, George Christophides, Adam J. Reid, Jean Langhorne

Publikováno v: Malaria Journal, Vol 20, Iss 1, Pp 1-14 (2021)

Abstract Background Plasmodium interspersed repeat (pir) is the largest multigene family in the genomes of most Plasmodium species. A variety of functions for the PIR proteins which they encode have been proposed, including antigenic variation, immun

Externí odkaz: https://doaj.org/article/9efaea334f8249f48589d96afa34ed43

Mapping cells to gene programs

Autor: Mohammad Lotfollahi, Sergei Rybakov, Karin Hrovatin, Soroor Hediyeh-zadeh, Carlos Talavera-Lopez, Alexander V Misharin, Fabian J. Theis

Single-cell data integration involves removing unwanted technical variations across multiple datasets. We introduce expiMap, an intepretable generative model that maps single cells to reference atlas1 and gene programs. Here, we describe a protocol f

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::1bdf596f4b77bd3bef9953184cc3171f
https://doi.org/10.21203/rs.3.pex-2092/v1

An integrated cell atlas of the human lung in health and disease

Autor: Malte Luecken, Lisa Sikkema, Daniel Strobl, Luke Zappia, Elo Madissoon, Nikolay Markov, Laure-Emmanuelle Zaragosi, Meshal Ansari, Marie-Jeanne Arguel, Leonie Apperloo, Christophe Becavin, Marijn Berg, Evgeny Chichelnitskiy, Mei-i Chung, Antoine Collin, Aurore Gay, Baharak Hooshiar Kashani, Manu Jain, Theodore Kapellos, Tessa Kole, Christoph Mayr, Michael von Papen, Lance Peter, Ciro Ramírez-Suástegui, Janine Schniering, Chase Taylor, Thomas Walzthoeni, Chuan Xu, Linh Bui, Carlo de Donno, Leander Dony, Minzhe Guo, Austin Gutierrez, Lukas Heumos, Ni Huang, Ignacio Ibarra Del Río, Nathan Jackson, Preetish Kadur Lakshminarasimha Murthy, Mohammad Lotfollahi, Tracy Tabib, Carlos Talavera-Lopez, Kyle Travaglini, Anna Wilbrey-Clark, Kaylee Worlock, Masahiro Yoshida, Tushar Desai, Orit Rozenblatt-Rosen, Christine Falk, Naftali Kaminski, Mark Krasnow, Robert Lafyatis, Marko Nikolic, Joseph Powell, Jay Rajagopal, Max Seibold, Dean Sheppard, Douglas Shepherd, Sarah Teichmann, Alexander Tsankov, Jeffrey Whitsett, Yan Xu, Nicholas Banovich, Pascal Barbry, Thu Duong, Kerstin Meyer, Jonathan Kropski, Dana Pe'er, Herbert Schiller, Purushothama Rao Tata, Joachim Schultze, Maarten van den Berge, Yuexin Chen, James Hagood, Ahmed Hassan, Peter Horvath, Joakim Lundeberg, Sylvie Leroy, Charles Marquette, Gloria Pryhuber, Christos Samakovlis, Xin Sun, Lorraine Ware, Kun Zhang, Alexander Misharin, Martijn Nawijn, Fabian Theis

Organ- and body-scale cell atlases have the potential to transform our understanding of human biology. To capture the variability present in the population, these atlases must include diverse demographics such as age and ethnicity from both healthy a

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::6c225b8ec842494e3c796c31c793715c
https://doi.org/10.21203/rs.3.rs-1438584/v1

Divergent clonal differentiation trajectories establish CD8

Autor: Jeff E, Mold, Laurent, Modolo, Joanna, Hård, Margherita, Zamboni, Anton J M, Larsson, Moa, Stenudd, Carl-Johan, Eriksson, Ghislain, Durif, Patrik L, Ståhl, Erik, Borgström, Simone, Picelli, Björn, Reinius, Rickard, Sandberg, Pedro, Réu, Carlos, Talavera-Lopez, Björn, Andersson, Kim, Blom, Johan K, Sandberg, Franck, Picard, Jakob, Michaëlsson, Jonas, Frisén

Publikováno v: Cell reports. 35(8)

The CD8

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid________::1e8269b9b7dc12df8d6ef73571ed9464
https://pubmed.ncbi.nlm.nih.gov/34038736