Zobrazeno 1 - 10
of 17
pro vyhledávání: '"Carla, Cummins"'
Autor:
Josephine Burgin, Alisha Ahamed, Carla Cummins, Rajkumar Devraj, Khadim Gueye, Dipayan Gupta, Vikas Gupta, Muhammad Haseeb, Maira Ihsan, Eugene Ivanov, Suran Jayathilaka, Vishnukumar Balavenkataraman Kadhirvelu, Manish Kumar, Ankur Lathi, Rasko Leinonen, Milena Mansurova, Jasmine McKinnon, Colman O’Cathail, Joana Paupério, Stéphane Pesant, Nadim Rahman, Gabriele Rinck, Sandeep Selvakumar, Swati Suman, Senthilnathan Vijayaraja, Zahra Waheed, Peter Woollard, David Yuan, Ahmad Zyoud, Tony Burdett, Guy Cochrane
Publikováno v:
Nucleic Acids Research. 51:D121-D125
The European Nucleotide Archive (ENA; https://www.ebi.ac.uk/ena), maintained by the European Molecular Biology Laboratory's European Bioinformatics Institute (EMBL-EBI), offers those producing data an open and supported platform for the management, a
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1f3317ada3fca5acb4f02269d7618faa
https://doi.org/10.1093/nar/gkac1051
https://doi.org/10.1093/nar/gkac1051
Autor:
Daqi Yu, Yandong Ren, Masahiro Uesaka, Alan J. S. Beavan, Matthieu Muffato, Jieyu Shen, Yongxin Li, Iori Sato, Wenting Wan, James W. Clark, Joseph N. Keating, Emily M. Carlisle, Richard P. Dearden, Sam Giles, Emma Randle, Robert S. Sansom, Roberto Feuda, James F. Fleming, Fumiaki Sugahara, Carla Cummins, Mateus Patricio, Wasiu Akanni, Salvatore D’Aniello, Cristiano Bertolucci, Naoki Irie, Cantas Alev, Guojun Sheng, Alex de Mendoza, Ignacio Maeso, Manuel Irimia, Bastian Fromm, Kevin J. Peterson, Sabyasachi Das, Masayuki Hirano, Jonathan P. Rast, Max D. Cooper, Jordi Paps, Davide Pisani, Shigeru Kuratani, Fergal J. Martin, Wen Wang, Philip C. J. Donoghue, Yong E. Zhang, Juan Pascual-Anaya
Whole genome duplications (WGDs) are major events that drastically reshape genome architecture and are causally associated with organismal innovations and radiations1. The 2R Hypothesis suggests that two WGD events (1R and 2R) occurred during early v
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1eae62d33751a79542b536e735aeb04a
https://doi.org/10.21203/rs.3.rs-2774434/v1
https://doi.org/10.21203/rs.3.rs-2774434/v1
Autor:
Fiona Cunningham, James E Allen, Jamie Allen, Jorge Alvarez-Jarreta, M Ridwan Amode, Irina M Armean, Olanrewaju Austine-Orimoloye, Andrey G Azov, If Barnes, Ruth Bennett, Andrew Berry, Jyothish Bhai, Alexandra Bignell, Konstantinos Billis, Sanjay Boddu, Lucy Brooks, Mehrnaz Charkhchi, Carla Cummins, Luca Da Rin Fioretto, Claire Davidson, Kamalkumar Dodiya, Sarah Donaldson, Bilal El Houdaigui, Tamara El Naboulsi, Reham Fatima, Carlos Garcia Giron, Thiago Genez, Jose Gonzalez Martinez, Cristina Guijarro-Clarke, Arthur Gymer, Matthew Hardy, Zoe Hollis, Thibaut Hourlier, Toby Hunt, Thomas Juettemann, Vinay Kaikala, Mike Kay, Ilias Lavidas, Tuan Le, Diana Lemos, José Carlos Marugán, Shamika Mohanan, Aleena Mushtaq, Marc Naven, Denye N Ogeh, Anne Parker, Andrew Parton, Malcolm Perry, Ivana Piližota, Irina Prosovetskaia, Manoj Pandian Sakthivel, Ahamed Imran Abdul Salam, Bianca M Schmitt, Helen Schuilenburg, Dan Sheppard, José G Pérez-Silva, William Stark, Emily Steed, Kyösti Sutinen, Ranjit Sukumaran, Dulika Sumathipala, Marie-Marthe Suner, Michal Szpak, Anja Thormann, Francesca Floriana Tricomi, David Urbina-Gómez, Andres Veidenberg, Thomas A Walsh, Brandon Walts, Natalie Willhoft, Andrea Winterbottom, Elizabeth Wass, Marc Chakiachvili, Bethany Flint, Adam Frankish, Stefano Giorgetti, Leanne Haggerty, Sarah E Hunt, Garth R IIsley, Jane E Loveland, Fergal J Martin, Benjamin Moore, Jonathan M Mudge, Matthieu Muffato, Emily Perry, Magali Ruffier, John Tate, David Thybert, Stephen J Trevanion, Sarah Dyer, Peter W Harrison, Kevin L Howe, Andrew D Yates, Daniel R Zerbino, Paul Flicek
Publikováno v:
Nucleic Acids Research
Ensembl (https://www.ensembl.org) is unique in its flexible infrastructure for access to genomic data and annotation. It has been designed to efficiently deliver annotation at scale for all eukaryotic life, and it also provides deep comprehensive ann
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5bc61b9a51d54c858d06019d88152bb8
https://doi.org/10.1093/nar/gkab1049
https://doi.org/10.1093/nar/gkab1049
Autor:
Kevin L Howe, Premanand Achuthan, James Allen, Jamie Allen, Jorge Alvarez-Jarreta, M Ridwan Amode, Irina M Armean, Andrey G Azov, Ruth Bennett, Jyothish Bhai, Konstantinos Billis, Sanjay Boddu, Mehrnaz Charkhchi, Carla Cummins, Luca Da Rin Fioretto, Claire Davidson, Kamalkumar Dodiya, Bilal El Houdaigui, Reham Fatima, Astrid Gall, Carlos Garcia Giron, Tiago Grego, Cristina Guijarro-Clarke, Leanne Haggerty, Anmol Hemrom, Thibaut Hourlier, Osagie G Izuogu, Thomas Juettemann, Vinay Kaikala, Mike Kay, Ilias Lavidas, Tuan Le, Diana Lemos, Jose Gonzalez Martinez, José Carlos Marugán, Thomas Maurel, Aoife C McMahon, Shamika Mohanan, Benjamin Moore, Matthieu Muffato, Denye N Oheh, Dimitrios Paraschas, Anne Parker, Andrew Parton, Irina Prosovetskaia, Manoj P Sakthivel, Ahamed I Abdul Salam, Bianca M Schmitt, Helen Schuilenburg, Dan Sheppard, Emily Steed, Michal Szpak, Marek Szuba, Kieron Taylor, Anja Thormann, Glen Threadgold, Brandon Walts, Andrea Winterbottom, Marc Chakiachvili, Ameya Chaubal, Nishadi De Silva, Bethany Flint, Adam Frankish, Sarah E Hunt, Garth R IIsley, Nick Langridge, Jane E Loveland, Fergal J Martin, Jonathan M Mudge, Joanella Morales, Emily Perry, Magali Ruffier, John Tate, David Thybert, Stephen J Trevanion, Fiona Cunningham, Andrew D Yates, Daniel R Zerbino, Paul Flicek
Publikováno v:
Nucleic Acids Research
The Ensembl project (https://www.ensembl.org) annotates genomes and disseminates genomic data for vertebrate species. We create detailed and comprehensive annotation of gene structures, regulatory elements and variants, and enable comparative genomic
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3acf2b1e4ce6fffbf540115da342447b
https://doi.org/10.1093/nar/gkaa942
https://doi.org/10.1093/nar/gkaa942
Ensembl (https://www.ensembl.org) is unique in its flexible infrastructure for access to genomic data and annotation. It has been designed to efficiently deliver annotation at scale for all eukaryotic life, and it also provides deep comprehensive ann
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=od______2659::af0dde32a1479a0416229c518909561f
https://zenodo.org/record/7688817
https://zenodo.org/record/7688817
Autor:
Bruno Contreras-Moreira, Laurent Gil, Uma Maheswari, Erin Haskell, Paul Flicek, Kim E. Hammond-Kosack, Stephen J. Trevanion, Matthieu Barba, Sushma Naithani, Matthew Russell, Mark D. McDowall, Nancy George, Andrew D. Yates, Emily Perry, Vasily Sitnik, Dan Bolser, Michael Paulini, Paul J. Kersey, Pankaj Jaiswal, Mikkel B. Christensen, Helder Pedro, Gareth Maslen, Lahcen Cambell, Sophie Helen Janacek, Daniel M. Staines, Gary Williams, Matthieu Muffato, Carla Cummins, Wasiu Akanni, Marc Rosello, James E. Allen, Irene Papatheodorou, Astrid Gall, Nick Langridge, Marc Chakiachvili, Joshua C. Stein, Mateus Patricio, Silvie Fexova, Nishadi De Silva, Sarah E. Hunt, Benjamin Moore, Martin Urban, Justin Preece, Marcela K. Tello-Ruiz, Guy Naamati, Andrew Olson, Parul Gupta, Thomas Maurel, Jorge Alvarez-Jarreta, Doreen Ware, Paul Davis, Manuel Carbajo, Alayne Cuzick, Kevin L. Howe, Sharon Wei
Publikováno v:
Nucleic Acids Research
Ensembl Genomes (http://www.ensemblgenomes.org) is an integrating resource for genome-scale data from non-vertebrate species, complementing the resources for vertebrate genomics developed in the context of the Ensembl project (http://www.ensembl.org)
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::39960d68152c3f45a7845609bded93fd
https://doi.org/10.1093/nar/gkz890
https://doi.org/10.1093/nar/gkz890
Autor:
Carla Cummins, Andrew D. Yates, Astrid Gall, Daniel R. Zerbino, Anne Parker, Denye Ogeh, David Thybert, Adam Frankish, Bruno Contreras-Moreira, Jyothish Bhai, Fergal J. Martin, Andrea Winterbottom, Benjamin Moore, Magali Ruffier, Robert D. Finn, John Tate, Thiago A. L. Genez, Kevin L. Howe, Stephen J. Trevanion, Dan Sheppard, Sarah E. Hunt, Paul Flicek, Manoj Pandian Sakthivel, Andrew Parton, Anja Thormann, Marc Chakiachvili, Nishadi De Silva
Publikováno v:
Nucleic Acids Research
The COVID-19 pandemic has seen unprecedented use of SARS-CoV-2 genome sequencing for epidemiological tracking and identification of emerging variants. Understanding the potential impact of these variants on the infectivity of the virus and the effica
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::59ee5791ae89b906755f255fd2291548
https://doi.org/10.1101/2020.12.18.422865
https://doi.org/10.1101/2020.12.18.422865
The Ensembl project (https://www.ensembl.org) annotates genomes and disseminates genomic data for vertebrate species. We create detailed and comprehensive annotation of gene structures, regulatory elements and variants, and enable comparative genomic
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=od______2659::92dd3b62513cd8b4c68666de9d24498b
https://zenodo.org/record/7688906
https://zenodo.org/record/7688906
Autor:
Fiona Cunningham, Premanand Achuthan, Wasiu Akanni, James Allen, M Ridwan Amode, Irina M Armean, Ruth Bennett, Jyothish Bhai, Konstantinos Billis, Sanjay Boddu, Carla Cummins, Claire Davidson, Kamalkumar Jayantilal Dodiya, Astrid Gall, Carlos García Girón, Laurent Gil, Tiago Grego, Leanne Haggerty, Erin Haskell, Thibaut Hourlier, Osagie G Izuogu, Sophie H Janacek, Thomas Juettemann, Mike Kay, Matthew R Laird, Ilias Lavidas, Zhicheng Liu, Jane E Loveland, José C Marugán, Thomas Maurel, Aoife C McMahon, Benjamin Moore, Joannella Morales, Jonathan M Mudge, Michael Nuhn, Denye Ogeh, Anne Parker, Andrew Parton, Mateus Patricio, Ahamed Imran Abdul Salam, Bianca M Schmitt, Helen Schuilenburg, Dan Sheppard, Helen Sparrow, Eloise Stapleton, Marek Szuba, Kieron Taylor, Glen Threadgold, Anja Thormann, Alessandro Vullo, Brandon Walts, Andrea Winterbottom, Amonida Zadissa, Marc Chakiachvili, Adam Frankish, Sarah E Hunt, Myrto Kostadima, Nick Langridge, Fergal J Martin, Matthieu Muffato, Emily Perry, Magali Ruffier, Daniel M Staines, Stephen J Trevanion, Bronwen L Aken, Andrew D Yates, Daniel R Zerbino, Paul Flicek
Publikováno v:
Nucleic Acids Research
The Ensembl project (https://www.ensembl.org) makes key genomic data sets available to the entire scientific community without restrictions. Ensembl seeks to be a fundamental resource driving scientific progress by creating, maintaining and updating
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::42bb0745f5f44e984bb1f2bbfd9fda58
http://europepmc.org/articles/PMC6323964
http://europepmc.org/articles/PMC6323964
Autor:
Kerstin Howe, Thomas M. Keane, Paul Flicek, David Thybert, Bronwen Aken, David Martín-Gálvez, Golbahar Yazdanifar, Christine Feig, Cristina Sisu, Duncan T. Odom, Son Pham, Stefanie Nachtweide, Laura Clarke, Ian Streeter, Carla Cummins, Varshith Chakrapani, Lilue Jingtao, Cock van Oosterhout, Ian T. Fiddes, Alvis Brazma, David J. Adams, William Chow, Frédéric Veyrunes, Maša Roller, Mikhail Kolmogorov, Christina M. Laukaitis, Ambre Aurore Josselin, Matthew Howell, Fergal J. Martin, Klara Stefflova, Benedict Paten, Mario Stanke, Matthieu Muffato, Mark Gerstein, Leo Goodstadt, Fengtang Yang, Michael A. Quail, Anthony G. Doran, Václav Janoušek, Ben J. Ward, Sarah Aldridge, Amonida Zadissa, Fabio C. P. Navarro, Robert C. Karn, Matthew Dunn, Wasiu Akanni
Publikováno v:
Genome Research
Genome Research, Cold Spring Harbor Laboratory Press, 2018, 28 (4), pp.448-459. ⟨10.1101/gr.234096.117⟩
Genome Research, 2018, 28 (4), pp.448-459. ⟨10.1101/gr.234096.117⟩
Genome Research, Cold Spring Harbor Laboratory Press, 2018, 28 (4), pp.448-459. ⟨10.1101/gr.234096.117⟩
Genome Research, 2018, 28 (4), pp.448-459. ⟨10.1101/gr.234096.117⟩
Understanding the mechanisms driving lineage-specific evolution in both primates and rodents has been hindered by the lack of sister clades with a similar phylogenetic structure having high-quality genome assemblies. Here, we have created chromosome-
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::609fd04d943fa94511f96a605cf6355f
https://www.repository.cam.ac.uk/handle/1810/279898
https://www.repository.cam.ac.uk/handle/1810/279898