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of 5
pro vyhledávání: '"Carissa Bleker"'
Autor:
Maja Zagorščak, Jan Zrimec, Carissa Bleker, Nadja Nolte, Mojca Juteršek, Živa Ramšak, Kristina Gruden, Marko Petek
Publikováno v:
Frontiers in Plant Science, Vol 15 (2024)
Potato (Solanum tuberosum) is the most popular tuber crop and a model organism. A variety of gene models for potato exist, and despite frequent updates, they are not unified. This hinders the comparison of gene models across versions, limits the abil
Externí odkaz:
https://doaj.org/article/0eac53a5e10a42a2a555498799319e9d
Autor:
Kaleb Abram, Zulema Udaondo, Carissa Bleker, Visanu Wanchai, Trudy M. Wassenaar, Michael S. Robeson, David W. Ussery
Publikováno v:
Communications Biology, Vol 4, Iss 1, Pp 1-12 (2021)
Kaleb Abram and Zulema Udaondo et al. analyze over 100,000 publicly available E. coli and Shigella genome sequences and perform a Mash-based analysis to identify 14 unique phylogroups. Their results reveal that most of the sequenced E. coli genomes b
Externí odkaz:
https://doaj.org/article/04d6eb542d164c8788a178b4adabb5b0
Autor:
Deborah Weighill, Piet Jones, Carissa Bleker, Priya Ranjan, Manesh Shah, Nan Zhao, Madhavi Martin, Stephen DiFazio, David Macaya-Sanz, Jeremy Schmutz, Avinash Sreedasyam, Timothy Tschaplinski, Gerald Tuskan, Daniel Jacobson
Publikováno v:
Frontiers in Genetics, Vol 10 (2019)
Various patterns of multi-phenotype associations (MPAs) exist in the results of Genome Wide Association Studies (GWAS) involving different topologies of single nucleotide polymorphism (SNP)-phenotype associations. These can provide interesting inform
Externí odkaz:
https://doaj.org/article/b52ac025773049e4a2e88b70e83b551f
Autor:
Zulema Udaondo, Trudy M. Wassenaar, Visanu Wanchai, Kaleb Z. Abram, Carissa Bleker, David W. Ussery, Michael S. Robeson
Publikováno v:
Communications Biology
Communications Biology, Vol 4, Iss 1, Pp 1-12 (2021)
Communications Biology, Vol 4, Iss 1, Pp 1-12 (2021)
In this study, more than one hundred thousand Escherichia coli and Shigella genomes were examined and classified. This is, to our knowledge, the largest E. coli genome dataset analyzed to date. A Mash-based analysis of a cleaned set of 10,667 E. coli
Autor:
Trudy M. Wassenaar, Michael S. Robeson, Kaleb Z. Abram, Wanchai, Zulema Udaondo, David W. Ussery, Carissa Bleker
The explosion of microbial genome sequences in public databases allows for large-scale population genomic studies of bacterial species, such as Escherichia coli. In this study, we examine and classify more than one hundred thousand E. coli and Shigel
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f0024ab9844a1285fa49fde80425d337