Zobrazeno 1 - 10
of 78
pro vyhledávání: '"Carin K. Vanderpool"'
Autor:
Anustup Poddar, Muhammad S. Azam, Tunc Kayikcioglu, Maksym Bobrovskyy, Jichuan Zhang, Xiangqian Ma, Piyush Labhsetwar, Jingyi Fei, Digvijay Singh, Zaida Luthey-Schulten, Carin K. Vanderpool, Taekjip Ha
Publikováno v:
Nature Communications, Vol 12, Iss 1, Pp 1-15 (2021)
Bacterial small RNA SgrS binds and regulates its primary target, ptsG mRNA. Here the authors employ Sort-Seq and super resolution imaging to investigate in vivo target recognition and rejection kinetics of SgrS.
Externí odkaz:
https://doaj.org/article/260d7031d6064787a1c0ef3b7e025390
Autor:
Matthew A. Reyer, Shriram Chennakesavalu, Emily M. Heideman, Xiangqian Ma, Magda Bujnowska, Lu Hong, Aaron R. Dinner, Carin K. Vanderpool, Jingyi Fei
Publikováno v:
Cell Reports, Vol 36, Iss 13, Pp 109764- (2021)
Summary: Small RNAs (sRNAs) are important gene regulators in bacteria. Many sRNAs act post-transcriptionally by affecting translation and degradation of the target mRNAs upon base-pairing interactions. Here we present a general approach combining ima
Externí odkaz:
https://doaj.org/article/e691deedae4c409898c5742a69ce88c4
Autor:
David M. Bianchi, Troy A. Brier, Anustup Poddar, Muhammad S. Azam, Carin K. Vanderpool, Taekjip Ha, Zaida Luthey-Schulten
Publikováno v:
Frontiers in Molecular Biosciences, Vol 7 (2020)
Small RNAs (sRNAs) play a crucial role in the regulation of bacterial gene expression by silencing the translation of target mRNAs. SgrS is an sRNA that relieves glucose-phosphate stress, or “sugar shock” in E. coli. The power of single cell meas
Externí odkaz:
https://doaj.org/article/4ee871bd8a8148d496a6c0d95e17bbc1
Autor:
David Lalaouna, Karine Prévost, Seongjin Park, Thierry Chénard, Marie-Pier Bouchard, Marie-Pier Caron, Carin K. Vanderpool, Jingyi Fei, Eric Massé
Publikováno v:
Non-Coding RNA, Vol 7, Iss 4, p 64 (2021)
Many RNA-RNA interactions depend on molecular chaperones to form and remain stable in living cells. A prime example is the RNA chaperone Hfq, which is a critical effector involved in regulatory interactions between small RNAs (sRNAs) and cognate targ
Externí odkaz:
https://doaj.org/article/8ef8bb7e941d4804aa2118e1b026f638
Publikováno v:
mSphere, Vol 4, Iss 1 (2019)
ABSTRACT Small RNAs (sRNAs) posttranscriptionally regulate mRNA targets, typically under conditions of environmental stress. Although hundreds of sRNAs have been discovered in diverse bacterial genomes, most sRNAs remain uncharacterized, even in mode
Externí odkaz:
https://doaj.org/article/571c317f22b34c4c8b28c3a27ce399c9
Publikováno v:
mSystems, Vol 1, Iss 1 (2016)
ABSTRACT Hundreds of small RNAs (sRNAs) have been identified in diverse bacterial species, and while the functions of most remain unknown, some regulate key processes, particularly stress responses. The sRNA DicF was identified over 25 years ago as a
Externí odkaz:
https://doaj.org/article/24445ba7236140899805ff0c53899f68
Publikováno v:
Frontiers in Cellular and Infection Microbiology, Vol 4 (2014)
Bacteria adapt to ever-changing habitats through specific responses to internal and external stimuli that result in changes in gene regulation and metabolism. One internal metabolic cue affecting such changes in Escherichia coli and related enteric s
Externí odkaz:
https://doaj.org/article/e1597ccca2934cf7882006a676fb5cbd
ThedicBFoperon of Qin cryptic prophage inEscherichia coliK12 encodes the small RNA (sRNA) DicF and small protein DicB, which regulate host cell division and are toxic when overexpressed. While new functions of DicB and DicF have been identified in re
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::8935bfecb0da15fdae9a11f2775745cc
https://doi.org/10.1101/2023.04.14.536235
https://doi.org/10.1101/2023.04.14.536235
Autor:
Sabrina Z. Abdulla, Kyungsub Kim, Muhammad S. Azam, Yekaterina A. Golubeva, Fatih Cakar, James M. Slauch, Carin K. Vanderpool
Publikováno v:
J Bacteriol
Salmonella enterica serovar Typhimurium is an enteric pathogen associated with foodborne disease. Salmonella invades the intestinal epithelium using a type three secretion system encoded on Salmonella pathogenicity island 1 (SPI-1). SPI-1 genes are t
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::603508f937a53079770895a7eb473cde
https://europepmc.org/articles/PMC9879128/
https://europepmc.org/articles/PMC9879128/
Autor:
Sabrina Z. Abdulla, Kyungsub Kim, Muhammad S. Azam, Yekaterina A. Golubeva, Fatih Cakar, James M. Slauch, Carin K. Vanderpool
Salmonella enterica serovar Typhimurium is an enteric pathogen associated with food-borne disease. Salmonella invades the intestinal epithelium using a type three secretion system encoded in Salmonella pathogenicity Island 1 (SPI-1). SPI-1 genes are
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::9c56ac0a583496c03f1d3ce05fd632a0
https://doi.org/10.1101/2022.09.07.507058
https://doi.org/10.1101/2022.09.07.507058