The Transposable Element Environment of Human Genes Differs According to Their Duplication Status and Essentiality

Autor: Bérengère Bouillon, Emmanuelle Lerat, Franck Samson, Kévin Normand, Margot Correa, Carène Rizzon, Etienne Birmelé

Publikováno v: Genome Biol Evol
Genome Biology and Evolution
Genome Biology and Evolution, 2021, 13 (5), ⟨10.1093/gbe/evab062⟩
Genome Biology and Evolution, Society for Molecular Biology and Evolution, 2021, 13 (5), ⟨10.1093/gbe/evab062⟩

Erratum: https://doi.org/10.1093/gbe/evab175; International audience; Transposable elements (TEs) are major components of eukaryotic genomes and represent approximately 45% of the human genome. TEs can be important sources of novelty in genomes and t

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f827b3250dc63492d30a0dfa8a71de1d
https://europepmc.org/articles/PMC8155550/

Does the Presence of Transposable Elements Impact the Epigenetic Environment of Human Duplicated Genes?

Autor: Romain Lannes, Emmanuelle Lerat, Carène Rizzon

Publikováno v: Genes
Genes, MDPI, 2019, 10 (3), pp.249. ⟨10.3390/genes10030249⟩
Genes, Vol 10, Iss 3, p 249 (2019)
Genes, 2019, 10 (3), pp.249. ⟨10.3390/genes10030249⟩
Volume 10
Issue 3
Genes 3 (10), 1-19. (2019)

International audience; Epigenetic modifications have an important role to explain part of the intra-and inter-species variation in gene expression. They also have a role in the control of transposable elements (TEs) whose activity may have a signifi

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::34e049c6575a06bebca5b1899111921f
https://hal.sorbonne-universite.fr/hal-02120974/document

Do genetic recombination and gene density shape the pattern of DNA elimination in rice long terminal repeat retrotransposons?

Autor: Brandon S. Gaut, Jianchang Du, Jianxin Ma, Zhixi Tian, Carène Rizzon, Jeffrey L. Bennetzen, Liucun Zhu, Scott A. Jackson

In flowering plants, the accumulation of small deletions through unequal homologous recombination (UR) and illegitimate recombination (IR) is proposed to be the major process counteracting genome expansion, which is caused primarily by the periodic a

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::561201d1331738f209ec5fc7fd203169
https://europepmc.org/articles/PMC2792168/

Striking Similarities in the Genomic Distribution of Tandemly Arrayed Genes in Arabidopsis and Rice

Autor: Carène Rizzon, Brandon S. Gaut, Loic Ponger

Publikováno v: Rizzon, Carene; Ponger, Loic; & Gaut, Brandon S. (2006). Striking Similarities in the Genomic Distribution of Tandemly Arrayed Genes in Arabidopsis and Rice. PLoS Computational Biology, 2(9), e115. doi: 10.1371/journal.pcbi.0020115. UC Irvine: Retrieved from: http://www.escholarship.org/uc/item/3kk2h4sk
PLoS Computational Biology, Vol 2, Iss 9, p e115 (2006)
PLoS Computational Biology

In Arabidopsis, tandemly arrayed genes (TAGs) comprise >10% of the genes in the genome. These duplicated genes represent a rich template for genetic innovation, but little is known of the evolutionary forces governing their generation and maintenance

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6c3870f5cd3425bf7ecbb1d50e17a4c7
http://www.escholarship.org/uc/item/3kk2h4sk

Patterns of selection against transposons inferred from the distribution of Tc1, Tc3 and Tc5 insertions in the mut-7 line of the nematode Caenorhabditis elegans

Autor: Carène Rizzon, Christian Biémont, Gabriel A. B. Marais, Laurent Ségalat, Laurent Duret, Edwige Martin

Publikováno v: Genetics. 165(3)

To identify the factors (selective or mutational) that affect the distribution of transposable elements (TEs) within a genome, it is necessary to compare the pattern of newly arising element insertions to the pattern of element insertions that have b

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6cfca07423eaabdddf69070d7c7beb53
https://pubmed.ncbi.nlm.nih.gov/14668370