Zobrazeno 1 - 10
of 130
pro vyhledávání: '"Capra JA"'
Autor:
Bruneau, Benoit, Ott, Melanie, Pollard, Katherine, Simonti, CN, Pollard, KS, Schröder, S, He, D, Bruneau, BG, Capra, JA
Publikováno v:
Bruneau, Benoit; Ott, Melanie; Pollard, Katherine; Simonti, CN; Pollard, KS; Schröder, S; et al.(2015). Evolution of lysine acetylation in the RNA polymerase II C-terminal domain. UC San Francisco: Retrieved from: http://www.escholarship.org/uc/item/1876s9c9
© 2015 Simonti et al.; licensee BioMed Central.Background: RPB1, the largest subunit of RNA polymerase II, contains a highly modifiable C-terminal domain (CTD) that consists of variations of a consensus heptad repeat sequence (Y1S2P
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=od_______325::313bd0181a1f0dc94e99ba6b5e285445
http://www.escholarship.org/uc/item/1876s9c9
http://www.escholarship.org/uc/item/1876s9c9
Autor:
Ahituv, Nadav, Pollard, Katherine, Erwin, GD, Oksenberg, N, Truty, RM, Kostka, D, Murphy, KK, Pollard, KS, Capra, JA
Publikováno v:
Ahituv, Nadav; Pollard, Katherine; Erwin, GD; Oksenberg, N; Truty, RM; Kostka, D; et al.(2014). Integrating Diverse Datasets Improves Developmental Enhancer Prediction. UC San Francisco: Retrieved from: http://www.escholarship.org/uc/item/5624j4p4
Gene-regulatory enhancers have been identified using various approaches, including evolutionary conservation, regulatory protein binding, chromatin modifications, and DNA sequence motifs. To integrate these different approaches, we developed Enhancer
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=od_______325::146f8bd5fff07fc33d85ff0f086400d7
http://www.escholarship.org/uc/item/5624j4p4
http://www.escholarship.org/uc/item/5624j4p4
Autor:
Rubenstein, John, Pollard, Katherine, Capra, JA, Erwin, GD, Mckinsey, G, Rubenstein, JLR, Pollard, KS
Publikováno v:
Rubenstein, John; Pollard, Katherine; Capra, JA; Erwin, GD; Mckinsey, G; Rubenstein, JLR; et al.(2013). Many human accelerated regions are developmental enhancers. UC San Francisco: Retrieved from: http://www.escholarship.org/uc/item/9kc2f3m3
The genetic changes underlying the dramatic differences in form and function between humans and other primates are largely unknown, although it is clear that gene regulatory changes play an important role. To identify regulatory sequences with potent
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=od_______325::73383188f0418f17452c899fb634480d
http://www.escholarship.org/uc/item/9kc2f3m3
http://www.escholarship.org/uc/item/9kc2f3m3
Publikováno v:
Pollard, Katherine; Capra, JA; Hubisz, MJ; Kostka, D; Pollard, KS; & Siepel, A. (2013). A Model-Based Analysis of GC-Biased Gene Conversion in the Human and Chimpanzee Genomes. UC San Francisco: Retrieved from: http://www.escholarship.org/uc/item/2bq8v899
GC-biased gene conversion (gBGC) is a recombination-associated process that favors the fixation of G/C alleles over A/T alleles. In mammals, gBGC is hypothesized to contribute to variation in GC content, rapidly evolving sequences, and the fixation o
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=od_______325::4f0a31ada3d243f0e25afab4b1ddd9c2
http://www.escholarship.org/uc/item/2bq8v899
http://www.escholarship.org/uc/item/2bq8v899
Publikováno v:
Pollard, Katherine; Capra, JA; Williams, AG; & Pollard, KS. (2012). Proteinhistorian: Tools for the comparative analysis of eukaryote protein origin. UC San Francisco: Retrieved from: http://www.escholarship.org/uc/item/8sw4s906
The evolutionary history of a protein reflects the functional history of its ancestors. Recent phylogenetic studies identified distinct evolutionary signatures that characterize proteins involved in cancer, Mendelian disease, and different ontogenic
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=od_______325::f531a72644c71ebe0794bc496576a3a8
http://www.escholarship.org/uc/item/8sw4s906
http://www.escholarship.org/uc/item/8sw4s906
Akademický článek
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Autor:
Cutts Z; University of California, San Francisco, San Francisco., Patterson S; University of California, San Francisco, San Francisco., Maliskova L; University of California, San Francisco, San Francisco., Taylor KE; University of California, San Francisco, San Francisco., Ye CJ; University of California, San Francisco, San Francisco., Dall'Era M; University of California, San Francisco, San Francisco., Yazdany J; University of California, San Francisco, San Francisco., Criswell LA; National Human Genome Research Institute, NIH, Bethesda, Maryland., Fragiadakis GK; University of California, San Francisco, San Francisco., Langelier C; University of California, San Francisco, San Francisco., Capra JA; University of California, San Francisco, San Francisco., Sirota M; University of California, San Francisco, San Francisco., Lanata CM; National Human Genome Research Institute, NIH, Bethesda, Maryland.
Publikováno v:
ACR open rheumatology [ACR Open Rheumatol] 2024 Aug 14. Date of Electronic Publication: 2024 Aug 14.
Autor:
Moth CW; Departments of Chemistry, Pharmacology, and Biomedical Informatics; Center for Structural Biology and Institute of Chemical Biology; Vanderbilt Univ., Nashville, TN 37232, USA., Sheehan JH; Division of Infection Diseases, Milliken Dept. of Internal Medicine, Washington Univ. of Medicine in St. Louis, MO 63110, USA., Mamun AA; Departments of Chemistry, Pharmacology, and Biomedical Informatics; Center for Structural Biology and Institute of Chemical Biology; Vanderbilt Univ., Nashville, TN 37232, USA., Sivley RM; Biomedical Informatics at 5Prime Sciences, Montreal, Canada., Gulsevin A; Department of Pharmaceutical Sciences, College of Pharmacy and Health Sciences, Butler University, Indianapolis, IN 46208, USA., Rinker D; Department of Biological Sciences, Evolutionary Studies Initiative; Vanderbilt Univ., Nashville, TN 37232, USA., Capra JA; Bakar Computational Health Science Institute and Department of Epidemiology and Biostatistics, Univ. of California San Francisco, CA 94143, USA., Meiler J; Departments of Chemistry, Pharmacology, and Biomedical Informatics; Center for Structural Biology and Institute of Chemical Biology; Vanderbilt Univ., Nashville, TN 37232, USA.; Leipzig University Medical School, Institute for Drug Discovery, Brüderstraße 34, 04103 Leipzig, Germany.
Publikováno v:
BioRxiv : the preprint server for biology [bioRxiv] 2024 Aug 07. Date of Electronic Publication: 2024 Aug 07.
Autor:
Estevam GO; Department of Bioengineering and Therapeutic Sciences, UCSF, San Francisco, CA, United States.; Tetrad Graduate Program, UCSF, San Francisco, CA, United States., Linossi EM; Cardiovascular Research Institute, UCSF, San Francisco, CA, United States.; Department of Cellular and Molecular Pharmacology, UCSF, San Francisco, CA, United States., Rao J; Department of Computer Science, UCLA, Los Angeles, CA, United States., Macdonald CB; Department of Bioengineering and Therapeutic Sciences, UCSF, San Francisco, CA, United States., Ravikumar A; Department of Bioengineering and Therapeutic Sciences, UCSF, San Francisco, CA, United States., Chrispens KM; Department of Bioengineering and Therapeutic Sciences, UCSF, San Francisco, CA, United States.; Biophysics Graduate Program, UCSF, San Francisco, CA, United States., Capra JA; Bakar Computational Health Sciences Institute and Department of Epidemiology and Biostatistics, UCSF, San Francisco, CA, United States., Coyote-Maestas W; Department of Bioengineering and Therapeutic Sciences, UCSF, San Francisco, CA, United States.; Quantitative Biosciences Institute, UCSF, San Francisco, CA, United States., Pimentel H; Department of Computer Science, UCLA, Los Angeles, CA, United States.; Department of Computational Medicine and Human Genetics, UCLA, Los Angeles, CA, United States.; Department of Human Genetics, David Geffen School of Medicine, UCLA, Los Angeles, CA, United States., Collisson EA; Human Biology, Fred Hutchinson Cancer Center, Seattle, Washington, United States.; Department of Medicine, University of Washington, Seattle, Washington, United States., Jura N; Cardiovascular Research Institute, UCSF, San Francisco, CA, United States.; Department of Cellular and Molecular Pharmacology, UCSF, San Francisco, CA, United States.; Quantitative Biosciences Institute, UCSF, San Francisco, CA, United States., Fraser JS; Department of Bioengineering and Therapeutic Sciences, UCSF, San Francisco, CA, United States.; Quantitative Biosciences Institute, UCSF, San Francisco, CA, United States.
Publikováno v:
BioRxiv : the preprint server for biology [bioRxiv] 2024 Jul 18. Date of Electronic Publication: 2024 Jul 18.
Autor:
Liang Q; Department of Computational & Systems Biology and Center for Evolutionary Biology and Medicine, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA; Department of Human Genetics, University of Pittsburgh School of Public Health, Pittsburgh, PA, USA., Abraham A; Children's Hospital of Philadelphia, Philadelphia, PA, USA., Capra JA; Department of Epidemiology & Biostatistics and Bakar Computational Health Sciences Institute, University of California, San Francisco, San Francisco, CA, USA., Kostka D; Department of Computational & Systems Biology and Center for Evolutionary Biology and Medicine, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA. Electronic address: kostka@pitt.edu.
Publikováno v:
HGG advances [HGG Adv] 2024 Jul 18; Vol. 5 (3), pp. 100310. Date of Electronic Publication: 2024 May 21.