Zobrazeno 1 - 10
of 39
pro vyhledávání: '"Can FI"'
Autor:
Meryem Banu Cavlak, Gagandeep Singh, Mohammed Alser, Can Firtina, Joël Lindegger, Mohammad Sadrosadati, Nika Mansouri Ghiasi, Can Alkan, Onur Mutlu
Publikováno v:
Frontiers in Genetics, Vol 15 (2024)
Basecalling is an essential step in nanopore sequencing analysis where the raw signals of nanopore sequencers are converted into nucleotide sequences, that is, reads. State-of-the-art basecallers use complex deep learning models to achieve high basec
Externí odkaz:
https://doaj.org/article/588617d7fa3f4eb1b1413e1c1e1301b3
Autor:
Gagandeep Singh, Mohammed Alser, Kristof Denolf, Can Firtina, Alireza Khodamoradi, Meryem Banu Cavlak, Henk Corporaal, Onur Mutlu
Publikováno v:
Genome Biology, Vol 25, Iss 1, Pp 1-29 (2024)
Abstract Nanopore sequencing generates noisy electrical signals that need to be converted into a standard string of DNA nucleotide bases using a computational step called basecalling. The performance of basecalling has critical implications for all l
Externí odkaz:
https://doaj.org/article/10f69e22b63a4076b05bc9347cff3aa4
Autor:
Can Ficicioglu, Jaya Ganesh, Wendy Smith, Melissa Lah, David Kudrow, Jalé Güner, Sharon McDermott, Sagar Vaidya, Liz Wilkening, Janet Thomas, Harvey Levy
Publikováno v:
Genetics in Medicine Open, Vol 2, Iss , Pp 100889- (2024)
Externí odkaz:
https://doaj.org/article/3c3e02c8f0154487a18dfd9490fcced4
Autor:
Can Ficicioglu, Nicole Muschol, Barbara Burton, Martin Magner, Mercedes Gil-Campos, Monica Lopez Rodriguez, Parul Jayakar, Allan Lund, Galit Tal, Jose Elias Garcia-Ortiz, Karolina Stepien, Carolyn Ellaway, Walla Al-Hertani, Roberto Giugliani, Sara Cathey, Julia Hennermann, Christina Lampe, Markey McNutt, Florian Lagler, Maurizio Scarpa, Vernon Sutton, Nathalie Guffon
Publikováno v:
Genetics in Medicine Open, Vol 2, Iss , Pp 101385- (2024)
Externí odkaz:
https://doaj.org/article/dc3764e5ff4e49c6bda982c9b948cc22
A 90-year-old female patient was admitted to our clinic complaining of pain in her left hip which occurred due to fall from a chair. Her medical history included memory loss and mental changes associated with Alzheimer's disease and depression. Patie
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9da5b2e2fee1fb0ca7d0fb0bc3678d97
https://avesis.gazi.edu.tr/publication/details/c2b7867d-5f1f-497f-82ae-f2517efae83c/oai
https://avesis.gazi.edu.tr/publication/details/c2b7867d-5f1f-497f-82ae-f2517efae83c/oai
Autor:
Taha Shahroodi, Mahdi Zahedi, Can Firtina, Mohammed Alser, Stephan Wong, Onur Mutlu, Said Hamdioui
Publikováno v:
IEEE Access, Vol 10, Pp 82493-82510 (2022)
Food profiling is an essential step in any food monitoring system needed to prevent health risks and potential frauds in the food industry. Significant improvements in sequencing technologies are pushing food profiling to become the main computationa
Externí odkaz:
https://doaj.org/article/1d358a0450c84dbda5fc51e36f66f851
Autor:
Mohammed Alser, Joel Lindegger, Can Firtina, Nour Almadhoun, Haiyu Mao, Gagandeep Singh, Juan Gomez-Luna, Onur Mutlu
Publikováno v:
Computational and Structural Biotechnology Journal, Vol 20, Iss , Pp 4579-4599 (2022)
We now need more than ever to make genome analysis more intelligent. We need to read, analyze, and interpret our genomes not only quickly, but also accurately and efficiently enough to scale the analysis to population level. There currently exist maj
Externí odkaz:
https://doaj.org/article/8666527f6f054a95931fe915d38c8975
Autor:
Tiziano Pramparo, Kimberly Chapman, Ying Chen, Can Ficicioglu, Harvey Levy, Janet Thomas, Sagar Vaidya, Steve Rodems, Ellen Crushell
Publikováno v:
Genetics in Medicine Open, Vol 1, Iss 1, Pp 100007- (2023)
Externí odkaz:
https://doaj.org/article/83c497a9394344e4943eae03728d04de
Autor:
Barbara Burton, Can Ficicioglu, Helio Pedro, Ravi Pathak, Ian Robinson, Ekaterina Wright, Joseph Muenzer
Publikováno v:
Genetics in Medicine Open, Vol 1, Iss 1, Pp 100161- (2023)
Externí odkaz:
https://doaj.org/article/68a37484062542a593963d5369d1189e
Autor:
Amy Brower, Kee Chan, Marc Williams, Susan Berry, Robert Currier, Piero Rinaldo, Michele Caggana, Amy Gaviglio, William Wilcox, Robert Steiner, Ingrid A. Holm, Jennifer Taylor, Joseph J. Orsini, Luca Brunelli, Joanne Adelberg, Olaf Bodamer, Sarah Viall, Curt Scharfe, Melissa Wasserstein, Jin Y. Chen, Maria Escolar, Aaron Goldenberg, Kathryn Swoboda, Can Ficicioglu, Dieter Matern, Rachel Lee, Michael Watson
Publikováno v:
Frontiers in Genetics, Vol 13 (2022)
Each year, through population-based newborn screening (NBS), 1 in 294 newborns is identified with a condition leading to early treatment and, in some cases, life-saving interventions. Rapid advancements in genomic technologies to screen, diagnose, an
Externí odkaz:
https://doaj.org/article/69e4a7a69f5f45cab99bfe2d9ff3fbdd